Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 1.1e-77 293.1 134 100.0
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 1.7e-59 232.6 134 80.6
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 2.0e-55 219.2 138 73.9
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 2.2e-54 215.7 135 74.8
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 2.2e-54 215.7 135 74.1
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 6.5e-51 204.1 136 73.5
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 1.8e-48 196.1 135 68.1
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 1.7e-46 189.5 135 69.6
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 4.9e-46 188.0 137 67.9
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 1.1e-45 186.8 137 67.9
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 6.6e-43 177.6 139 64.7
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 7.5e-39 164.1 139 61.9
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 1.8e-32 142.9 135 52.6
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.8e-32 142.9 94 64.9
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 2.3e-32 142.5 101 61.4
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 2.3e-32 142.5 136 51.5
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 1.5e-31 139.8 112 60.7
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 2.6e-31 139.0 135 53.3
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 3.4e-31 138.7 99 61.6
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 5.8e-31 137.9 112 58.9
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 7.5e-31 137.5 117 55.6
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 8.3e-30 134.0 134 49.3
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 1.1e-29 133.7 130 50.0
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 1.4e-29 133.3 105 59.0
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 4.1e-29 131.7 72 76.4
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 1.6e-28 129.8 119 54.6
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 3.5e-28 128.6 89 64.0
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 4.6e-28 128.3 109 54.1
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 6.0e-28 127.9 90 62.2
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 7.8e-28 127.5 115 52.2
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 7.8e-28 127.5 131 48.9
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 1.0e-27 127.1 72 69.4
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 1.0e-27 127.1 105 54.3
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 1.3e-27 126.7 112 54.5
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 3.0e-27 125.6 73 68.5
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 1.9e-26 122.9 103 53.4
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 4.3e-26 121.7 89 60.7
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 2.8e-25 119.0 76 61.8
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 2.8e-25 119.0 67 68.7
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 3.6e-25 118.6 94 56.4
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 3.6e-25 118.6 68 73.5
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 8.1e-25 117.5 117 53.0
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 1.8e-24 116.3 98 55.1
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 1.8e-24 116.3 98 55.1
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 2.3e-24 115.9 72 65.3
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 3.1e-24 115.5 119 51.3
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 5.2e-24 114.8 94 55.3
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 1.2e-23 113.6 98 54.1
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 4.4e-23 111.7 103 53.4
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 7.5e-23 110.9 103 53.4
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 9.8e-23 110.5 98 52.0
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 1.3e-22 110.2 127 46.5
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 1.3e-22 110.2 98 56.1
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 2.2e-22 109.4 89 58.4
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 3.7e-22 108.6 112 50.0
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 6.4e-22 107.8 92 53.3
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 8.3e-22 107.5 103 51.5
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 1.1e-21 107.1 103 50.5
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 2.4e-21 105.9 121 47.1
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 7.1e-21 104.4 117 45.3
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 1.2e-20 103.6 74 56.8
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 3.5e-20 102.1 61 65.6
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 6.6e-19 97.8 85 52.9
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 1.1e-18 97.1 123 39.8
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 2.5e-18 95.9 120 45.8
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 3.3e-18 95.5 85 54.1
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 4.3e-18 95.1 96 45.8
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 9.5e-18 94.0 68 55.9
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 9.5e-18 94.0 97 45.4
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 2.8e-17 92.4 109 45.0
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 3.6e-17 92.0 106 48.1
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 3.6e-17 92.0 105 49.5
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 3.6e-17 92.0 69 58.0
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 3.6e-17 92.0 99 44.4
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 3.6e-17 92.0 105 50.5
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 6.2e-17 91.3 65 63.1
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 4.0e-16 88.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.4990 Anthoceros agrestis HOM05D007770 ORTHO05D009827 4.0e-16 88.6 63 55.6
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 4.0e-16 88.6 75 57.3
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 8.9e-16 87.4 76 53.9
Zm00001eb035580 Zea mays HOM05D007770 ORTHO05D009827 3.4e-15 85.5 155 36.1
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 7.6e-15 84.3 106 44.3
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 8.4e-14 80.9 116 41.4
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 1.1e-13 80.5 106 43.4
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 2.7e-12 75.9 53 56.6
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 1.3e-11 73.6 73 46.6
Peaxi162Scf00213g00947 Petunia axillaris HOM05D007770 ORTHO05D009827 1.2e-07 60.5 134 32.8
MD08G1226400 Malus domestica HOM05D007770 ORTHO05D009827 2.0e-07 59.7 30 76.7
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 4.4e-07 58.5 33 63.6


User provided reference genes

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