Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g02420 Schrenkiella parvula HOM05D000988 ORTHO05D000724 8.4e-100 367.1 194 100.0
Thhalv10000332m.g Eutrema salsugineum HOM05D000988 ORTHO05D000724 1.6e-61 240.0 198 72.2
AT2G23430 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 2.8e-50 202.6 194 66.0
AL4G13370 Arabidopsis lyrata HOM05D000988 ORTHO05D000724 4.0e-49 198.7 193 65.3
Aa31LG7G13560 Aethionema arabicum HOM05D000988 ORTHO05D000724 2.0e-45 186.4 201 61.7
CARHR293050 Cardamine hirsuta HOM05D000988 ORTHO05D000724 6.6e-44 181.4 195 65.1
BcaC07g40986 Brassica carinata HOM05D000988 ORTHO05D000724 8.6e-44 181.0 192 63.5
BolC8t51560H Brassica oleracea HOM05D000988 ORTHO05D000724 2.5e-43 179.5 194 64.4
A09p56920 Brassica napus HOM05D000988 ORTHO05D000724 3.1e-41 172.6 196 61.2
BraA09t41084Z Brassica rapa HOM05D000988 ORTHO05D000724 3.1e-41 172.6 196 61.2
C08p39880 Brassica napus HOM05D000988 ORTHO05D000724 1.3e-39 167.2 193 60.6
THA.LOC104819843 Tarenaya hassleriana HOM05D000988 ORTHO05D000724 1.9e-22 110.2 196 41.8
Carub.0004s0263 Capsella rubella HOM05D000988 ORTHO05D000724 5.2e-17 92.0 78 62.8
TWI09G0765 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 3.9e-12 75.9 205 34.6
Atru.chr3.348 Acer truncatum HOM05D000988 ORTHO05D000724 5.1e-12 75.5 140 38.6
Gohir.D11G197900 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.5e-11 73.2 186 35.5
Carub.0004s0264 Capsella rubella HOM05D000988 ORTHO05D000724 4.3e-11 72.4 74 64.9
Cc07_g05910 Coffea canephora HOM05D000988 ORTHO05D000724 7.3e-11 71.6 202 32.7
Gorai.007G211800 Gossypium raimondii HOM05D000988 ORTHO05D000724 7.3e-11 71.6 182 34.1
Cpa.g.sc55.167 Carica papaya HOM05D000988 ORTHO05D000724 1.6e-10 70.5 192 34.9
Sc03g0001510 Simmondsia chinensis HOM05D000988 ORTHO05D000724 2.8e-10 69.7 196 36.2
Potri.007G042300 Populus trichocarpa HOM05D000988 ORTHO05D000724 4.8e-10 68.9 209 31.6
Ciclev10026517m.g Citrus clementina HOM05D000988 ORTHO05D000724 6.2e-10 68.6 180 36.7
Gohir.A11G191100 Gossypium hirsutum HOM05D000988 ORTHO05D000724 1.1e-09 67.8 182 33.5
Thecc.01G054100 Theobroma cacao HOM05D000988 ORTHO05D000724 1.1e-09 67.8 183 37.7
CSS0047121 Camellia sinensis var. sinensis HOM05D000988 ORTHO05D000724 1.8e-09 67.0 181 33.7
Nitab4.5_0001064g0030 Nicotiana tabacum HOM05D000988 ORTHO05D000724 2.4e-09 66.6 64 51.6
Psat2g166040 Pisum sativum HOM05D000988 ORTHO05D000724 2.4e-09 66.6 144 38.2
Oeu050777.1 Olea europaea HOM05D000988 ORTHO05D000724 6.9e-09 65.1 182 29.7
COL.COLO4_11396 Corchorus olitorius HOM05D000988 ORTHO05D000724 9.0e-09 64.7 123 41.5
Manes.12G103100 Manihot esculenta HOM05D000988 ORTHO05D000724 9.0e-09 64.7 195 32.3
Manes.13G127100 Manihot esculenta HOM05D000988 ORTHO05D000724 9.0e-09 64.7 201 32.8
Duzib187G2011 Durio zibethinus HOM05D000988 ORTHO05D000724 1.2e-08 64.3 181 35.4
Nitab4.5_0000033g0440 Nicotiana tabacum HOM05D000988 ORTHO05D000724 1.2e-08 64.3 64 50.0
TWI73G0652 Tripterygium wilfordii HOM05D000988 ORTHO05D000724 1.5e-08 63.9 158 37.3
arahy.Tifrunner.gnm1.ann1.2BG7C4 Arachis hypogaea HOM05D000988 ORTHO05D000724 2.0e-08 63.5 49 61.2
arahy.Tifrunner.gnm1.ann1.U4YTZL Arachis hypogaea HOM05D000988 ORTHO05D000724 2.0e-08 63.5 49 61.2
Duzib147G1455 Durio zibethinus HOM05D000988 ORTHO05D000724 3.4e-08 62.8 177 33.9
Gohir.A12G070500 Gossypium hirsutum HOM05D000988 ORTHO05D000724 3.4e-08 62.8 183 33.3
Actinidia36500 Actinidia chinensis HOM05D000988 ORTHO05D000724 4.5e-08 62.4 138 37.0
Migut.H00444 Erythranthe guttata HOM05D000988 ORTHO05D000724 4.5e-08 62.4 193 29.0
Gohir.D12G088300 Gossypium hirsutum HOM05D000988 ORTHO05D000724 4.5e-08 62.4 182 33.5
Gorai.008G074800 Gossypium raimondii HOM05D000988 ORTHO05D000724 4.5e-08 62.4 178 34.3
CANSAT01G1117 Cannabis sativa HOM05D000988 ORTHO05D000724 5.8e-08 62.0 127 37.0
RcHm_v2.0_Chr2g0105111 Rosa chinensis HOM05D000988 ORTHO05D000724 5.8e-08 62.0 146 32.2
GSVIVG01022145001 Vitis vinifera HOM05D000988 ORTHO05D000724 5.8e-08 62.0 205 32.7
CiPaw.02G008800 Carya illinoinensis HOM05D000988 ORTHO05D000724 7.6e-08 61.6 125 36.0
SalBow5G1305 Salvia bowleyana HOM05D000988 ORTHO05D000724 7.6e-08 61.6 186 32.3
SalBow5G4663 Salvia bowleyana HOM05D000988 ORTHO05D000724 7.6e-08 61.6 186 32.3
Cfa004004 Carpinus fangiana HOM05D000988 ORTHO05D000724 9.9e-08 61.2 125 38.4
FAN19G1762 Fragaria x ananassa HOM05D000988 ORTHO05D000724 9.9e-08 61.2 150 32.7
FAN26G1516 Fragaria x ananassa HOM05D000988 ORTHO05D000724 1.3e-07 60.8 147 32.0
Phvul.003G244700 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 1.3e-07 60.8 182 33.5
CiPaw.01G019400 Carya illinoinensis HOM05D000988 ORTHO05D000724 1.7e-07 60.5 125 37.6
VMungo1215G1251 Vigna mungo HOM05D000988 ORTHO05D000724 2.2e-07 60.1 144 35.4
FAN23G0955 Fragaria x ananassa HOM05D000988 ORTHO05D000724 2.9e-07 59.7 147 34.7
Nitab4.5_0001034g0100 Nicotiana tabacum HOM05D000988 ORTHO05D000724 2.9e-07 59.7 163 33.1
Dinv29977 Davidia involucrata HOM05D000988 ORTHO05D000724 3.8e-07 59.3 197 33.5
Dinv39865 Davidia involucrata HOM05D000988 ORTHO05D000724 3.8e-07 59.3 192 32.8
FvH4_1g15820 Fragaria vesca HOM05D000988 ORTHO05D000724 3.8e-07 59.3 147 32.0
Ah.02g124190 Amaranthus hybridus HOM05D000988 ORTHO05D000724 4.9e-07 58.9 63 50.8
Migut.K00762 Erythranthe guttata HOM05D000988 ORTHO05D000724 4.9e-07 58.9 185 29.2
FAN28G2662 Fragaria x ananassa HOM05D000988 ORTHO05D000724 4.9e-07 58.9 146 33.6
AT1G49620 Arabidopsis thaliana HOM05D000988 ORTHO05D000724 6.4e-07 58.5 158 34.8
Ca_24777_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 6.4e-07 58.5 146 34.9
Phvul.003G295400 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 6.4e-07 58.5 94 43.6
QL06p041825 Quercus lobata HOM05D000988 ORTHO05D000724 6.4e-07 58.5 145 34.5
THA.LOC104826988 Tarenaya hassleriana HOM05D010645 ORTHO05D000724 6.4e-07 58.5 159 35.2
BraA03t13894Z Brassica rapa HOM05D010645 ORTHO05D000724 8.4e-07 58.2 147 35.4
Eucgr.H02008 Eucalyptus grandis HOM05D000988 ORTHO05D000724 8.4e-07 58.2 143 34.3
Medtr5g017600 Medicago truncatula HOM05D000988 ORTHO05D000724 8.4e-07 58.2 179 31.8
Haze_15419 Corylus avellana HOM05D000988 ORTHO05D000724 1.1e-06 57.8 58 51.7
Peaxi162Scf00685g00069 Petunia axillaris HOM05D000988 ORTHO05D000724 1.1e-06 57.8 109 38.5
Psat4g087120 Pisum sativum HOM05D000988 ORTHO05D000724 1.1e-06 57.8 63 47.6
Sabra07G0037500 Salix brachista HOM05D000988 ORTHO05D000724 1.1e-06 57.8 126 37.3
MSTRG.23759 Avicennia marina HOM05D000988 ORTHO05D000724 1.4e-06 57.4 188 31.4
Ca_19505_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 1.9e-06 57.0 46 54.3
DCAR_025727 Daucus carota HOM05D000988 ORTHO05D000724 1.9e-06 57.0 174 32.8
Prupe.7G135000 Prunus persica HOM05D000988 ORTHO05D000724 1.9e-06 57.0 192 29.7
Gohir.D10G096200 Gossypium hirsutum HOM05D000988 ORTHO05D000724 2.4e-06 56.6 62 43.5
MD02G1170300 Malus domestica HOM05D000988 ORTHO05D000724 2.4e-06 56.6 178 30.9
Sp5g11590 Schrenkiella parvula HOM05D010645 ORTHO05D000724 2.4e-06 56.6 150 35.3
Hund16333 Selenicereus undatus HOM05D000988 ORTHO05D000724 2.4e-06 56.6 94 37.2
A03p47840 Brassica napus HOM05D010645 ORTHO05D000724 3.2e-06 56.2 147 34.0
Glyma.17G175700 Glycine max HOM05D000988 ORTHO05D000724 3.2e-06 56.2 191 27.2
TAR625G0816 Trochodendron aralioides HOM05D000988 ORTHO05D000724 3.2e-06 56.2 211 33.2
ClCG02G012780 Citrullus lanatus HOM05D000988 ORTHO05D000724 4.2e-06 55.8 198 31.3
SGA_v2.0_scaffold1G00752 Striga asiatica HOM05D000988 ORTHO05D000724 4.2e-06 55.8 62 48.4
TPR.G10255 Trifolium pratense HOM05D000988 ORTHO05D000724 4.2e-06 55.8 54 51.9
unitig_748.g8605 Utricularia gibba HOM05D000988 ORTHO05D000724 4.2e-06 55.8 170 32.9
Glyma.01G185400 Glycine max HOM05D000988 ORTHO05D000724 5.4e-06 55.5 149 35.6
Lj4g0023420 Lotus japonicus HOM05D000988 ORTHO05D000724 5.4e-06 55.5 148 37.2
Peaxi162Scf00047g00631 Petunia axillaris HOM05D000988 ORTHO05D000724 5.4e-06 55.5 44 63.6
RcHm_v2.0_Chr6g0258231 Rosa chinensis HOM05D000988 ORTHO05D000724 5.4e-06 55.5 94 41.5
Hund13559 Selenicereus undatus HOM05D000988 ORTHO05D000724 5.4e-06 55.5 60 46.7
Aqoxy5G01265 Aquilegia oxysepala HOM05D000988 ORTHO05D000724 7.1e-06 55.1 183 30.6
Thhalv10010715m.g Eutrema salsugineum HOM05D010645 ORTHO05D000724 7.1e-06 55.1 148 35.1
Gohir.A13G039400 Gossypium hirsutum HOM05D000988 ORTHO05D000724 7.1e-06 55.1 96 36.5
Lj1g0023642 Lotus japonicus HOM05D000988 ORTHO05D000724 7.1e-06 55.1 89 42.7
Sed0015277 Sechium edule HOM05D000988 ORTHO05D000724 7.1e-06 55.1 46 50.0
Sopen02g035320 Solanum pennellii HOM05D000988 ORTHO05D000724 7.1e-06 55.1 192 32.3
TPR.G21287 Trifolium pratense HOM05D000988 ORTHO05D000724 7.1e-06 55.1 144 32.6
TAR376G0444 Trochodendron aralioides HOM05D000988 ORTHO05D000724 7.1e-06 55.1 191 31.4
BcaC06g33308 Brassica carinata HOM05D010645 ORTHO05D000724 9.3e-06 54.7 150 34.0
C07p45820 Brassica napus HOM05D010645 ORTHO05D000724 9.3e-06 54.7 150 34.0
BolC7t45103H Brassica oleracea HOM05D010645 ORTHO05D000724 9.3e-06 54.7 150 34.0
Cfa005471 Carpinus fangiana HOM05D000988 ORTHO05D000724 9.3e-06 54.7 182 31.9
Ca_18673_v3 Cicer arietinum L. HOM05D000988 ORTHO05D000724 9.3e-06 54.7 48 54.2
CsaV3_3G029910 Cucumis sativus L. HOM05D000988 ORTHO05D000724 9.3e-06 54.7 77 48.1
Phvul.002G019500 Phaseolus vulgaris HOM05D000988 ORTHO05D000724 9.3e-06 54.7 143 35.7


User provided reference genes

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