Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 9.6e-43 176.4 88 100.0
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 4.0e-33 144.4 88 83.0
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 5.3e-33 144.1 88 80.7
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 5.3e-33 144.1 88 83.0
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 2.0e-32 142.1 88 81.8
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 2.0e-32 142.1 88 81.8
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 5.8e-32 140.6 88 80.7
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 5.8e-32 140.6 88 80.7
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 1.3e-31 139.4 87 80.5
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 1.6e-29 132.5 86 77.9
CARHR114180 Cardamine hirsuta HOM05D001756 ORTHO05D001581 2.3e-28 128.6 84 72.6
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 3.0e-28 128.3 88 70.5
CARHR114170 Cardamine hirsuta HOM05D001756 ORTHO05D001581 4.8e-26 120.9 84 69.0
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 9.3e-22 106.7 85 60.0
CARHR246110 Cardamine hirsuta HOM05D012092 ORTHO05D001581 2.2e-18 95.5 84 64.3
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 8.2e-18 93.6 84 64.3
THA.LOC104804198 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 1.1e-17 93.2 86 52.3
AT4G37720 Arabidopsis thaliana HOM05D012092 ORTHO05D001581 1.4e-17 92.8 84 59.5
A08p22740 Brassica napus HOM05D012092 ORTHO05D001581 7.7e-16 87.0 84 61.9
BraA08t34243Z Brassica rapa HOM05D012092 ORTHO05D001581 7.7e-16 87.0 84 61.9
Carub.0007s0253 Capsella rubella HOM05D012092 ORTHO05D001581 1.7e-15 85.9 86 59.3
BcaB03g12333 Brassica carinata HOM05D012092 ORTHO05D001581 3.8e-15 84.7 88 58.0
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 5.5e-14 80.9 83 50.6
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 1.2e-13 79.7 85 50.6
AL7G12960 Arabidopsis lyrata HOM05D012092 ORTHO05D001581 3.6e-13 78.2 66 60.6
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 4.6e-13 77.8 85 49.4
Thhalv10026843m.g Eutrema salsugineum HOM05D012092 ORTHO05D001581 7.9e-13 77.0 84 57.1
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 7.9e-13 77.0 85 49.4
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.1e-12 74.3 84 51.2
BcaNung02085 Brassica carinata HOM05D012092 ORTHO05D001581 1.5e-11 72.8 82 52.4
C07p62600 Brassica napus HOM05D012092 ORTHO05D001581 1.5e-11 72.8 82 52.4
BolC7t46675H Brassica oleracea HOM05D012092 ORTHO05D001581 1.5e-11 72.8 82 52.4
A03p65500 Brassica napus HOM05D012092 ORTHO05D001581 3.3e-11 71.6 82 52.4
BraA03t15602Z Brassica rapa HOM05D012092 ORTHO05D001581 3.3e-11 71.6 82 52.4
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.3e-11 71.2 85 48.2
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 5.7e-11 70.9 85 44.7
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 9.7e-11 70.1 81 49.4
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.3e-10 69.7 85 48.2
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 1.3e-10 69.7 85 48.2
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.8e-10 68.6 85 49.4
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.8e-10 68.6 85 48.2
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.7e-10 68.2 76 51.3
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.8e-10 67.8 85 47.1
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 4.8e-10 67.8 76 51.3
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 4.8e-10 67.8 78 50.0
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 6.3e-10 67.4 85 47.1
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 6.3e-10 67.4 83 45.8
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.1e-09 66.6 85 48.2
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 1.1e-09 66.6 83 44.6
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 1.1e-09 66.6 75 49.3
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 1.4e-09 66.2 86 46.5
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.4e-09 66.2 78 46.2
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 1.8e-09 65.9 89 42.7
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 1.8e-09 65.9 85 47.1
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 2.4e-09 65.5 85 47.1
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 3.1e-09 65.1 86 41.9
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 4.1e-09 64.7 89 40.4
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 4.1e-09 64.7 82 47.6
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 4.1e-09 64.7 85 47.1
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 5.3e-09 64.3 82 46.3
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 6.9e-09 63.9 85 45.9
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 6.9e-09 63.9 85 47.1
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 9.1e-09 63.5 75 50.7
MD15G1300000 Malus domestica HOM05D001756 ORTHO05D001581 9.1e-09 63.5 84 44.0
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 9.1e-09 63.5 80 47.5
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 9.1e-09 63.5 84 47.6
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 9.1e-09 63.5 84 47.6
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 1.5e-08 62.8 85 47.1
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 1.5e-08 62.8 85 47.1
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 2.0e-08 62.4 85 44.7
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 2.6e-08 62.0 85 47.1
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 2.6e-08 62.0 85 47.1
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 2.6e-08 62.0 82 50.0
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 3.4e-08 61.6 89 46.1
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 3.4e-08 61.6 85 44.7
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 3.4e-08 61.6 84 40.5
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 4.5e-08 61.2 81 46.9
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 4.5e-08 61.2 78 43.6
AUR62007537 Chenopodium quinoa HOM05D001756 ORTHO05D001581 4.5e-08 61.2 85 47.1
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 5.9e-08 60.8 85 45.9
arahy.Tifrunner.gnm1.ann1.200WTN Arachis hypogaea HOM05D001756 ORTHO05D001581 5.9e-08 60.8 86 40.7
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 7.7e-08 60.5 85 44.7
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 7.7e-08 60.5 76 48.7
arahy.Tifrunner.gnm1.ann1.APU27B Arachis hypogaea HOM05D001756 ORTHO05D001581 1.0e-07 60.1 86 39.5
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 1.0e-07 60.1 86 40.7
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.0e-07 60.1 76 48.7
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 1.0e-07 60.1 81 42.0
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 43.0
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 43.0
AUR62004029 Chenopodium quinoa HOM05D001756 ORTHO05D001581 1.3e-07 59.7 84 45.2
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 1.3e-07 59.7 82 47.6
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.7e-07 59.3 89 46.1
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 1.7e-07 59.3 82 46.3
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 1.7e-07 59.3 90 43.3
FvH4_2g32750 Fragaria vesca HOM05D001756 ORTHO05D001581 1.7e-07 59.3 87 42.5
FAN24G1728 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.7e-07 59.3 87 42.5
PSO017G5266 Papaver somniferum HOM05D001756 ORTHO05D001581 1.7e-07 59.3 82 43.9
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 2.2e-07 58.9 85 42.4
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 2.2e-07 58.9 83 47.0
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.2e-07 58.9 76 47.4
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 41.9
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 41.9
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 43.0
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 2.9e-07 58.5 82 46.3
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 43.0
EL10Ac6g15597 Beta vulgaris HOM05D001756 ORTHO05D001581 3.8e-07 58.2 86 47.7
Ciclev10029689m.g Citrus clementina HOM05D001756 ORTHO05D001581 3.8e-07 58.2 66 48.5
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 3.8e-07 58.2 84 45.2
CSS0014839 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.0e-07 57.8 89 41.6
CSS0047712 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.0e-07 57.8 89 41.6
FAN27G1437 Fragaria x ananassa HOM05D001756 ORTHO05D001581 5.0e-07 57.8 88 42.0
Gohir.A12G078300 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.0e-07 57.8 86 40.7
RcHm_v2.0_Chr6g0309921 Rosa chinensis HOM05D001756 ORTHO05D001581 5.0e-07 57.8 89 40.4
Glyma.17G233400 Glycine max HOM05D001756 ORTHO05D001581 6.5e-07 57.4 84 39.3
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 6.5e-07 57.4 84 36.9
Oeu025312.1 Olea europaea HOM05D001756 ORTHO05D001581 6.5e-07 57.4 86 38.4
CAN.G1343.3 Capsicum annuum HOM05D001756 ORTHO05D001581 8.5e-07 57.0 79 40.5
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 8.5e-07 57.0 84 38.1
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 8.5e-07 57.0 85 42.4
FAN15G0430 Fragaria x ananassa HOM05D001756 ORTHO05D001581 8.5e-07 57.0 88 40.9
Hma1.2p1_0210F.1_g089330 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 8.5e-07 57.0 80 43.8
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 8.5e-07 57.0 83 47.0
Hund13962 Selenicereus undatus HOM05D001756 ORTHO05D001581 8.5e-07 57.0 88 46.6
THA.LOC104825794 Tarenaya hassleriana HOM05D001756 ORTHO05D015390 8.5e-07 57.0 87 44.8
TWI77G0501 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 8.5e-07 57.0 82 40.2
CiPaw.06G164100 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 41.9
ClCG01G017770 Citrullus lanatus HOM05D001756 ORTHO05D001581 1.1e-06 56.6 83 41.0
Lalb_Chr08g0245221 Lupinus albus HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 46.5
PGR142G2395 Punica granatum HOM05D001756 ORTHO05D001581 1.1e-06 56.6 80 43.8
Sabra09G0065700 Salix brachista HOM05D001756 ORTHO05D001581 1.1e-06 56.6 81 40.7
arahy.Tifrunner.gnm1.ann1.Y577NZ Arachis hypogaea HOM05D001756 ORTHO05D001581 1.4e-06 56.2 86 37.2
CiPaw.05G020600 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 79 48.1
Ca_24672_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 1.4e-06 56.2 81 39.5
Ca_30012_v3 Cicer arietinum L. HOM05D001756 ORTHO05D001581 1.4e-06 56.2 81 39.5
Cc07_g07320 Coffea canephora HOM05D001756 ORTHO05D001581 1.4e-06 56.2 85 41.2
CiPaw.07G172800 Carya illinoinensis HOM05D001756 ORTHO05D001581 1.9e-06 55.8 81 46.9
CDE04G0180 Ceratophyllum demersum HOM05D001756 ORTHO05D001581 1.9e-06 55.8 84 36.9
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 1.9e-06 55.8 86 38.4
Nitab4.5_0000142g0340 Nicotiana tabacum HOM05D001756 ORTHO05D001581 1.9e-06 55.8 76 48.7
QL12p038416 Quercus lobata HOM05D001756 ORTHO05D001581 1.9e-06 55.8 86 39.5
Thecc.08G085400 Theobroma cacao HOM05D001756 ORTHO05D001581 1.9e-06 55.8 85 41.2
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.9e-06 55.8 85 42.4
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 1.9e-06 55.8 84 41.7
Atru.chr13.861 Acer truncatum HOM05D001756 ORTHO05D001581 2.5e-06 55.5 85 47.1
Cfa004383 Carpinus fangiana HOM05D001756 ORTHO05D001581 2.5e-06 55.5 84 44.0
Duzib093G0345 Durio zibethinus HOM05D001756 ORTHO05D001581 2.5e-06 55.5 85 43.5
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 2.5e-06 55.5 86 41.9
Duzib187G0009 Durio zibethinus HOM05D001756 ORTHO05D001581 2.5e-06 55.5 87 42.5
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 2.5e-06 55.5 86 38.4
QL11p029356 Quercus lobata HOM05D001756 ORTHO05D001581 2.5e-06 55.5 85 45.9
PGSC0003DMG400021407 Solanum tuberosum HOM05D001756 ORTHO05D001581 2.5e-06 55.5 76 46.1
arahy.Tifrunner.gnm1.ann1.HNL259 Arachis hypogaea HOM05D001756 ORTHO05D001581 3.2e-06 55.1 86 38.4
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 3.2e-06 55.1 85 37.6
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 3.2e-06 55.1 84 39.3
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 3.2e-06 55.1 83 42.2
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.2e-06 55.1 73 45.2
Rhsim08G0091000 Rhododendron simsii HOM05D001756 ORTHO05D001581 3.2e-06 55.1 82 46.3
Solyc02g092120.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 3.2e-06 55.1 76 44.7
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 4.2e-06 54.7 76 46.1
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 4.2e-06 54.7 77 42.9
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 4.2e-06 54.7 81 44.4
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 4.2e-06 54.7 78 39.7
Sabra02G0091600 Salix brachista HOM05D001756 ORTHO05D001581 4.2e-06 54.7 85 42.4
Sopen02g036710 Solanum pennellii HOM05D001756 ORTHO05D001581 4.2e-06 54.7 76 44.7
BcaC06g33373 Brassica carinata HOM05D012092 ORTHO05D001581 5.5e-06 54.3 72 45.8
CSS0048277 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.5e-06 54.3 82 39.0
CSS0049317 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 5.5e-06 54.3 82 39.0
CsaV3_6G044290 Cucumis sativus L. HOM05D001756 ORTHO05D001581 5.5e-06 54.3 83 41.0
Migut.B00462 Erythranthe guttata HOM05D001756 ORTHO05D001581 5.5e-06 54.3 80 37.5
HanXRQChr12g0376281 Helianthus annuus HOM05D001756 ORTHO05D001581 5.5e-06 54.3 76 42.1
Manes.13G109600 Manihot esculenta HOM05D001756 ORTHO05D001581 5.5e-06 54.3 87 43.7
PSO170G3613 Papaver somniferum HOM05D001756 ORTHO05D001581 5.5e-06 54.3 82 40.2
Rhsim06G0064100 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.5e-06 54.3 86 43.0
PGSC0003DMG400021406 Solanum tuberosum HOM05D001756 ORTHO05D001581 5.5e-06 54.3 76 46.1
Thecc.02G119700 Theobroma cacao HOM05D001756 ORTHO05D001581 5.5e-06 54.3 83 43.4
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 7.2e-06 53.9 76 44.7
GSVIVG01009309001 Vitis vinifera HOM05D001756 ORTHO05D001581 7.2e-06 53.9 87 40.2
GSVIVG01037055001 Vitis vinifera HOM05D001756 ORTHO05D001581 7.2e-06 53.9 88 42.0
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 9.4e-06 53.5 76 46.1
CANSAT25G3420 Cannabis sativa HOM05D001756 ORTHO05D001581 9.4e-06 53.5 85 41.2
ECA246G3808 Erigeron canadensis HOM05D001756 ORTHO05D001581 9.4e-06 53.5 85 44.7
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 89 40.4
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 9.4e-06 53.5 89 40.4
Lalb_Chr06g0164991 Lupinus albus HOM05D001756 ORTHO05D001581 9.4e-06 53.5 71 46.5
RcHm_v2.0_Chr6g0248481 Rosa chinensis HOM05D001756 ORTHO05D001581 9.4e-06 53.5 76 43.4
Solyc02g092110.3 Solanum lycopersicum HOM05D001756 ORTHO05D001581 9.4e-06 53.5 76 46.1
Sopen02g036700 Solanum pennellii HOM05D001756 ORTHO05D001581 9.4e-06 53.5 76 44.7


User provided reference genes

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