Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.9e-225 783.9 528 100.0
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.0e-155 554.3 551 68.1
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.5e-154 550.4 528 75.6
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 3.2e-149 532.7 529 70.5
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.3e-144 516.5 540 69.8
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.4e-143 512.7 517 70.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.4e-143 512.7 517 70.2
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 7.8e-140 501.5 534 71.0
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 8.6e-139 498.0 535 66.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 7.3e-138 495.0 538 69.7
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 3.6e-137 492.7 540 64.4
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.7e-137 492.3 519 71.5
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 8.1e-137 491.5 511 67.5
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 5.3e-128 462.2 509 69.9
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.0e-119 433.7 539 65.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 2.7e-108 396.7 551 57.7
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.2e-85 318.9 519 52.0
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 3.5e-79 300.1 566 48.8
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.1e-52 211.1 475 36.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.1e-52 211.1 492 36.8
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.7e-49 201.4 558 38.5
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 8.3e-49 199.1 478 36.4
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.3e-46 191.8 479 35.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.3e-46 191.8 489 35.2
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 6.6e-46 189.5 477 35.2
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.5e-45 188.3 515 39.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.5e-45 188.3 515 39.0
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.5e-45 187.6 492 34.6
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 2.5e-45 187.6 476 38.0
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 8.0e-44 182.6 477 37.9
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.8e-43 181.4 478 34.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 8.9e-43 179.1 481 35.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 5.8e-42 176.4 475 41.7
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.3e-41 175.3 489 35.8
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.3e-41 172.6 544 34.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 7.0e-40 169.5 464 34.7
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.0e-39 167.9 464 33.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.0e-39 167.9 487 33.9
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 6.0e-39 166.4 509 36.7
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.7e-38 164.9 475 33.1
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.7e-38 164.9 473 34.0
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.7e-38 164.9 473 34.0
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.0e-38 164.1 505 33.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 5.0e-38 163.3 494 33.8
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.5e-37 161.8 482 33.4
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 2.5e-37 161.0 493 40.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.5e-37 161.0 495 32.1
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.2e-36 158.7 483 32.9
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.6e-36 157.1 494 41.3
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.6e-36 157.1 474 33.1
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 4.7e-36 156.8 481 39.7
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.1e-35 154.1 472 33.9
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.1e-35 154.1 481 32.6
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 5.2e-35 153.3 506 35.2
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.5e-34 151.8 472 32.4
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.5e-34 151.8 472 32.4
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.5e-34 151.8 478 33.3
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.0e-34 151.4 484 41.5
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-34 151.0 517 42.2
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 9.8e-34 149.1 475 37.5
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.2e-33 147.9 466 33.7
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.7e-33 147.1 494 31.2
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.7e-33 147.1 540 32.6
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.7e-33 147.1 470 32.8
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 6.4e-33 146.4 517 43.3
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.1e-32 145.6 525 34.7
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.4e-32 144.4 538 32.5
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 7.1e-32 142.9 482 33.0
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.2e-32 142.5 486 32.7
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.2e-31 142.1 488 33.2
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.6e-31 141.7 504 35.1
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.5e-31 140.6 159 49.7
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.5e-31 140.6 561 31.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 4.6e-31 140.2 457 33.3
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 6.0e-31 139.8 202 46.5
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.7e-30 138.3 477 33.1
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 2.3e-30 137.9 569 33.2
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.9e-30 137.1 517 32.7
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 6.6e-30 136.3 191 49.7
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.5e-29 135.2 489 31.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.5e-29 134.4 470 32.1
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.3e-29 134.0 489 38.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 4.3e-29 133.7 529 32.3
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 9.5e-29 132.5 197 46.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.2e-28 132.1 244 45.5
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.1e-27 129.0 464 31.9
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.2e-27 126.7 482 30.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 5.2e-27 126.7 195 44.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 6.8e-27 126.3 476 32.6
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 8.9e-27 125.9 477 32.3
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.6e-26 124.4 475 31.4
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 4.4e-26 123.6 475 30.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 4.4e-26 123.6 507 36.7
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.4e-26 123.6 474 30.6
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.7e-25 121.7 191 44.0
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.9e-25 120.9 511 30.3
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 3.7e-25 120.6 464 31.2
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 3.7e-25 120.6 480 30.2
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 6.4e-25 119.8 506 36.4
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.4e-24 118.6 417 31.7
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 4.1e-24 117.1 484 30.6
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 5.4e-24 116.7 469 29.2
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-23 115.5 485 30.3
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 2.7e-23 114.4 480 30.6
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.5e-23 114.0 483 27.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 4.6e-23 113.6 444 31.3
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.6e-23 113.6 481 33.9
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 4.6e-23 113.6 191 50.3
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 7.8e-23 112.8 480 33.1
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.3e-22 112.1 412 32.0
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.3e-22 112.1 492 36.2
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.7e-22 111.7 482 28.6
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.7e-22 111.7 400 31.0
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.7e-22 111.7 137 48.9
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.0e-22 110.9 492 36.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 5.1e-22 110.2 438 29.7
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 5.1e-22 110.2 438 29.7
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 6.6e-22 109.8 542 29.5
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 8.6e-22 109.4 473 29.6
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.5e-21 107.8 479 34.2
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 4.3e-21 107.1 214 41.6
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 7.3e-21 106.3 444 31.1
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 9.6e-21 105.9 469 31.1
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 9.6e-21 105.9 476 29.4
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 9.6e-21 105.9 470 30.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.2e-20 103.2 473 29.2
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 6.2e-20 103.2 460 28.3
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 6.2e-20 103.2 467 31.9
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 8.1e-20 102.8 518 28.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 8.1e-20 102.8 437 32.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 1.8e-19 101.7 133 47.4
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.8e-19 101.7 519 31.2
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.1e-19 100.9 435 34.5
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.5e-18 98.6 402 33.6
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.2e-17 94.7 445 29.9
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.9e-17 94.4 465 27.3
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.9e-17 94.4 596 30.0
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.1e-16 92.4 459 34.9
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.9e-16 91.7 513 26.1
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.2e-16 90.5 515 27.4
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 5.4e-16 90.1 488 28.3
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.1e-16 89.7 473 30.4
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 1.2e-15 89.0 596 29.7
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 2.1e-15 88.2 186 39.2
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.1e-15 88.2 182 38.5
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.3e-13 80.9 147 38.8
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.3e-13 80.9 496 27.2
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 7.3e-13 79.7 151 39.7
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 1.3e-12 79.0 169 36.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.6e-12 78.6 472 27.3
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 6.2e-12 76.6 196 32.7
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 8.1e-12 76.3 476 26.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 8.1e-12 76.3 496 25.0
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 3.1e-11 74.3 159 37.1
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 5.3e-11 73.6 100 44.0
BolC3t21046H Brassica oleracea HOM05D009573 ORTHO05D004035 6.9e-11 73.2 86 52.3
BolC9t55701H Brassica oleracea HOM05D009573 ORTHO05D014968 1.5e-10 72.0 86 52.3
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.5e-10 72.0 458 26.9
C03p81970 Brassica napus HOM05D009573 ORTHO05D014968 2.0e-10 71.6 75 57.3
BolC6t37222H Brassica oleracea HOM05D009573 ORTHO05D004035 2.0e-10 71.6 86 51.2
C03p81960 Brassica napus HOM05D009573 ORTHO05D016742 2.6e-10 71.2 86 51.2
C06p24730 Brassica napus HOM05D009573 ORTHO05D014968 2.6e-10 71.2 86 51.2
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.6e-10 71.2 141 36.2
BolC4t28025H Brassica oleracea HOM05D009573 ORTHO05D014968 3.4e-10 70.9 86 51.2
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 3.4e-10 70.9 471 24.4
BcaC08g44389 Brassica carinata HOM05D009573 ORTHO05D016742 5.8e-10 70.1 86 51.2
BolC6t37033H Brassica oleracea HOM05D009573 ORTHO05D014968 5.8e-10 70.1 86 51.2
BcaC09g50974 Brassica carinata HOM05D009573 ORTHO05D016742 7.6e-10 69.7 86 50.0
C01p18560 Brassica napus HOM05D009573 ORTHO05D016742 7.6e-10 69.7 86 50.0
BolC6t37626H Brassica oleracea HOM05D009573 ORTHO05D014968 1.3e-09 68.9 86 50.0
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.2e-09 68.2 202 38.1
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.2e-09 68.2 146 51.4
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.9e-09 67.8 459 26.4
BolC2t11705H Brassica oleracea HOM05D009573 ORTHO05D014968 1.1e-08 65.9 71 56.3
C07p48280 Brassica napus HOM05D009573 ORTHO05D017440 1.6e-07 62.0 53 64.2
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 2.7e-07 61.2 194 32.0
BcaC06g34111 Brassica carinata HOM05D009573 ORTHO05D016742 3.5e-07 60.8 78 48.7
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.6e-07 60.5 468 25.9
BcaNung00969 Brassica carinata HOM05D003733 ORTHO05D004035 6.0e-07 60.1 95 40.0
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 6.0e-07 60.1 196 34.7
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.0e-07 60.1 492 27.0
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 7.9e-07 59.7 145 35.9
BolC5t29034H Brassica oleracea HOM05D009573 ORTHO05D004035 1.3e-06 58.9 53 60.4
BcaC06g33517 Brassica carinata HOM05D000005 ORTHO05D017440 3.9e-06 57.4 50 64.0
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 5.1e-06 57.0 196 34.7


User provided reference genes

Program Settings