Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g01570 Schrenkiella parvula HOM05D006593 ORTHO05D008512 0.0e+00 1364.7 708 100.0
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 0.0e+00 1184.1 703 87.9
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 0.0e+00 1131.7 696 84.8
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 0.0e+00 1131.7 696 84.8
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 0.0e+00 1130.5 696 84.5
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 0.0e+00 1127.9 698 84.0
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 0.0e+00 1124.8 696 83.5
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 0.0e+00 1124.8 696 83.5
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 0.0e+00 1122.8 696 84.1
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 0.0e+00 1122.1 698 84.0
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 0.0e+00 1077.0 661 84.6
THA.LOC104824911 Tarenaya hassleriana HOM05D006593 ORTHO05D008512 1.2e-265 919.8 722 69.3
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 1.9e-202 709.9 736 56.2
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 4.6e-196 688.7 728 55.2
Manes.13G098700 Manihot esculenta HOM05D006593 ORTHO05D008512 6.7e-195 684.9 730 55.1
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.1e-194 684.1 718 53.6
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.9e-194 683.3 719 52.6
Dinv01622 Davidia involucrata HOM05D006593 ORTHO05D008512 2.5e-194 682.9 723 53.5
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 4.8e-193 678.7 722 54.0
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.1e-192 677.6 730 51.9
QL06p035616 Quercus lobata HOM05D006593 ORTHO05D008512 1.1e-192 677.6 724 55.0
Sabra07G0008000 Salix brachista HOM05D006593 ORTHO05D008512 5.3e-192 675.2 720 54.9
Atru.chr3.1259 Acer truncatum HOM05D006593 ORTHO05D008512 1.6e-188 663.7 697 55.2
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 1.6e-188 663.7 722 53.6
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 2.7e-188 662.9 702 54.6
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 7.9e-188 661.4 736 52.0
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 3.7e-185 652.5 733 51.4
Actinidia06518 Actinidia chinensis HOM05D006593 ORTHO05D008512 6.3e-185 651.7 731 51.0
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 9.0e-184 647.9 725 52.0
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 3.4e-183 646.0 733 53.5
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 1.0e-182 644.4 728 50.7
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 2.2e-182 643.3 727 51.6
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 2.2e-182 643.3 732 50.4
Ciclev10003755m.g Citrus clementina HOM05D006593 ORTHO05D008512 1.1e-181 641.0 718 51.8
Duzib147G0804 Durio zibethinus HOM05D006593 ORTHO05D008512 1.4e-181 640.6 716 53.1
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 3.2e-181 639.4 727 49.9
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 3.0e-179 632.9 735 50.1
CANSAT01G0713 Cannabis sativa HOM05D006593 ORTHO05D008512 3.3e-178 629.4 732 51.4
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 1.7e-174 617.1 727 49.9
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 2.9e-174 616.3 723 52.6
Eucgr.I00552 Eucalyptus grandis HOM05D006593 ORTHO05D008512 5.0e-174 615.5 728 49.0
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 1.5e-170 604.0 741 48.2
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 4.4e-170 602.4 721 50.8
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 4.8e-169 599.0 723 50.9
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 6.3e-169 598.6 721 50.8
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 6.3e-169 598.6 741 47.5
arahy.Tifrunner.gnm1.ann1.67PG0W Arachis hypogaea HOM05D006593 ORTHO05D008512 1.8e-168 597.0 748 48.0
arahy.Tifrunner.gnm1.ann1.ZAKH7Z Arachis hypogaea HOM05D006593 ORTHO05D008512 1.8e-168 597.0 748 48.0
Prupe.6G198700 Prunus persica HOM05D006593 ORTHO05D008512 1.8e-168 597.0 677 51.4
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 2.4e-168 596.7 730 49.3
AUR62017964 Chenopodium quinoa HOM05D006593 ORTHO05D008512 1.2e-167 594.3 732 50.5
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.6e-167 594.0 721 50.2
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 2.0e-167 593.6 713 49.5
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 8.5e-166 588.2 728 47.1
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 1.1e-165 587.8 734 48.8
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 1.5e-165 587.4 722 50.1
AUR62003656 Chenopodium quinoa HOM05D006593 ORTHO05D008512 1.6e-164 583.9 727 50.3
Aqoxy5G01304_Aqoxy5G01305 Aquilegia oxysepala HOM05D006593 ORTHO05D008512 2.7e-164 583.2 724 48.1
Solyc11g010550.2 Solanum lycopersicum HOM05D006593 ORTHO05D008512 3.6e-164 582.8 714 48.6
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 6.1e-164 582.0 714 48.2
Sopen11g005350 Solanum pennellii HOM05D006593 ORTHO05D008512 3.0e-163 579.7 714 48.6
DCAR_014189 Daucus carota HOM05D006593 ORTHO05D008512 6.7e-163 578.6 682 49.0
PGSC0003DMG400016138 Solanum tuberosum HOM05D006593 ORTHO05D008512 6.7e-163 578.6 714 48.5
Psat2g085480 Pisum sativum HOM05D006593 ORTHO05D008512 9.7e-162 574.7 731 47.9
Lju188A1G72 Lonicera japonica HOM05D006593 ORTHO05D008512 2.0e-159 567.0 638 49.7
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 1.3e-158 564.3 779 45.3
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 6.5e-158 562.0 700 47.4
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 8.5e-158 561.6 728 48.1
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 9.4e-157 558.1 594 54.4
Oeu012466.1 Olea europaea HOM05D006593 ORTHO05D008512 9.4e-157 558.1 732 46.9
Nitab4.5_0004153g0020 Nicotiana tabacum HOM05D006593 ORTHO05D008512 3.6e-156 556.2 712 48.2
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 6.1e-156 555.4 714 46.1
Nitab4.5_0001468g0100 Nicotiana tabacum HOM05D006593 ORTHO05D008512 5.7e-154 548.9 712 47.6
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 1.4e-152 544.3 658 48.8
Migut.K00792 Erythranthe guttata HOM05D006593 ORTHO05D008512 1.2e-151 541.2 663 48.0
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 2.1e-148 530.4 744 44.6
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 1.4e-147 527.7 589 49.7
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 6.8e-147 525.4 698 46.7
SGA_v2.0_scaffold45G17238 Striga asiatica HOM05D006593 ORTHO05D008512 1.4e-144 517.7 647 46.7
SalBow5G0109 Salvia bowleyana HOM05D006593 ORTHO05D008512 2.7e-143 513.5 767 43.2
Eucgr.I00548 Eucalyptus grandis HOM05D006593 ORTHO05D008512 1.1e-141 508.1 728 42.9
unitig_748.g8644 Utricularia gibba HOM05D006593 ORTHO05D008512 2.6e-138 496.9 728 43.3
Peaxi162Scf00778g00014 Petunia axillaris HOM05D006593 ORTHO05D008512 6.4e-137 492.3 745 43.0
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 3.2e-136 490.0 584 47.6
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 4.6e-135 486.1 741 42.9
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 2.3e-131 473.8 742 41.8
CAN.G1843.3 Capsicum annuum HOM05D006593 ORTHO05D008512 1.9e-128 464.2 716 41.1
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 1.1e-123 448.4 563 46.2
VMungo1215G1341 Vigna mungo HOM05D006593 ORTHO05D008512 7.1e-120 435.6 621 43.5
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 2.9e-113 413.7 781 37.8
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 3.5e-111 406.8 683 39.8
Eucgr.I00472 Eucalyptus grandis HOM05D006593 ORTHO05D008512 1.9e-104 384.4 491 47.3
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 2.8e-100 370.5 796 34.2
SEGI_04856 Sequoiadendron giganteum HOM05D006593 ORTHO05D008512 1.3e-89 335.1 643 36.9
SEGI_21075 Sequoiadendron giganteum HOM05D006593 ORTHO05D008512 1.3e-89 335.1 643 36.9
CARHR113720 Cardamine hirsuta HOM05D006593 ORTHO05D008512 3.4e-74 283.9 168 89.9
HPP92_005969 Vanilla planifolia HOM05D006593 ORTHO05D008512 3.8e-65 253.8 351 44.4
HPP92_005976 Vanilla planifolia HOM05D006593 ORTHO05D008512 3.8e-65 253.8 351 44.4
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 5.0e-57 226.9 691 27.9
CAN.G1724.3 Capsicum annuum HOM05D006593 ORTHO05D008512 7.2e-56 223.0 689 32.4
MELO3C007718.2 Cucumis melo HOM05D006593 ORTHO05D008512 8.8e-54 216.1 665 30.8
CDE03G0370 Ceratophyllum demersum HOM05D006593 ORTHO05D008512 4.4e-53 213.8 286 45.1
Psat2g043360 Pisum sativum HOM05D006593 ORTHO05D008512 3.1e-51 207.6 260 45.0
Lalb_Chr05g0216281 Lupinus albus HOM05D006593 ORTHO05D008512 5.2e-46 190.3 160 65.6
GSVIVG01006735001 Vitis vinifera HOM05D006593 ORTHO05D008512 2.0e-45 188.3 247 46.2
GSVIVG01006089001 Vitis vinifera HOM05D006593 ORTHO05D008512 9.8e-37 159.5 132 67.4
Psat0ss25160g0040 Pisum sativum HOM05D000068 ORTHO05D020743 2.2e-28 131.7 176 46.6
HPP92_005975 Vanilla planifolia HOM05D006593 ORTHO05D008512 5.2e-22 110.5 186 40.9
GSVIVG01006734001 Vitis vinifera HOM05D006593 ORTHO05D008512 3.4e-21 107.8 72 76.4
CBR_g48853 Chara braunii HOM05D006593 ORTHO05D008512 1.2e-18 99.4 189 36.5
CAN.G689.26 Capsicum annuum HOM05D004630 ORTHO05D005727 2.3e-17 95.1 730 22.9
Nitab4.5_0004432g0030 Nicotiana tabacum HOM05D004630 ORTHO05D005727 1.2e-15 89.4 654 22.6
Sopen07g005480 Solanum pennellii HOM05D004630 ORTHO05D005727 2.8e-15 88.2 726 23.0
Solyc07g014610.4 Solanum lycopersicum HOM05D004630 ORTHO05D005727 4.7e-15 87.4 712 23.2
SalBow6G4274 Salvia bowleyana HOM05D004630 ORTHO05D005727 6.8e-14 83.6 714 23.5
HPP92_005968 Vanilla planifolia HOM05D006593 ORTHO05D008512 1.5e-13 82.4 80 53.8
Manes.11G127500 Manihot esculenta HOM05D004630 ORTHO05D005727 3.4e-13 81.3 741 21.5
Atru.chr1.2080 Acer truncatum HOM05D004630 ORTHO05D005727 7.5e-13 80.1 715 22.2
Ciclev10018715m.g Citrus clementina HOM05D004630 ORTHO05D005727 9.8e-13 79.7 719 22.1
VMungo1215G1222 Vigna mungo HOM05D004630 ORTHO05D005727 1.3e-12 79.3 713 22.0
Glyma.13G116800 Glycine max HOM05D004630 ORTHO05D005727 4.9e-12 77.4 709 21.3
Ca_21358_v3 Cicer arietinum L. HOM05D004630 ORTHO05D005727 6.4e-12 77.0 717 21.5
Phvul.003G124900 Phaseolus vulgaris HOM05D004630 ORTHO05D005727 3.2e-11 74.7 714 21.0
Psat6g040440 Pisum sativum HOM05D000610 ORTHO05D004774 4.1e-11 74.3 152 32.2
Prupe.1G208800 Prunus persica HOM05D004630 ORTHO05D005727 7.0e-11 73.6 708 21.3
MELO3C002801.2 Cucumis melo HOM05D004630 ORTHO05D005727 2.7e-10 71.6 739 23.5
Lalb_Chr12g0200461 Lupinus albus HOM05D004630 ORTHO05D005727 3.5e-10 71.2 711 21.9
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 6.0e-10 70.5 714 21.1
CsaV3_1G037410 Cucumis sativus L. HOM05D004630 ORTHO05D005727 1.7e-09 68.9 715 22.0
MBI05_g35190_MAGBIO Magnolia biondii HOM05D004630 ORTHO05D005727 1.7e-09 68.9 687 21.4
Potri.003G059300 Populus trichocarpa HOM05D004630 ORTHO05D005727 1.7e-09 68.9 730 21.5
Hund12270 Selenicereus undatus HOM05D004630 ORTHO05D005727 1.7e-09 68.9 737 22.4
Psat4g020520 Pisum sativum HOM05D004630 ORTHO05D005727 2.3e-09 68.6 726 21.3
SalBow2G2706 Salvia bowleyana HOM05D004630 ORTHO05D005727 2.3e-09 68.6 687 20.2
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 3.0e-09 68.2 713 21.9
MD13G1136600 Malus domestica HOM05D004630 ORTHO05D005727 3.0e-09 68.2 712 21.2
SalBow7G2764 Salvia bowleyana HOM05D004630 ORTHO05D005727 5.0e-09 67.4 682 20.1
Sed0000779 Sechium edule HOM05D004630 ORTHO05D005727 5.0e-09 67.4 718 21.3
Aqoxy7G01739 Aquilegia oxysepala HOM05D004630 ORTHO05D005727 8.6e-09 66.6 735 21.4
Actinidia21906 Actinidia chinensis HOM05D004630 ORTHO05D005727 1.1e-08 66.2 721 22.5
ClCG03G006320 Citrullus lanatus HOM05D004630 ORTHO05D005727 1.5e-08 65.9 743 21.9
Medtr4g123557 Medicago truncatula HOM05D004630 ORTHO05D005727 1.5e-08 65.9 708 21.3
Duzib187G1410 Durio zibethinus HOM05D004630 ORTHO05D005727 1.9e-08 65.5 712 21.8
SHI11357 Sapria himalayana HOM05D004630 ORTHO05D005727 2.5e-08 65.1 738 22.0
DCAR_009035 Daucus carota HOM05D004630 ORTHO05D005727 3.3e-08 64.7 623 22.2
Eucgr.B01002 Eucalyptus grandis HOM05D004630 ORTHO05D005727 3.3e-08 64.7 709 21.3
PGSC0003DMG400020700 Solanum tuberosum HOM05D004630 ORTHO05D005727 3.3e-08 64.7 329 24.9
Nn7g38087 Nelumbo nucifera HOM05D004630 ORTHO05D005727 4.3e-08 64.3 719 21.0
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 4.3e-08 64.3 762 21.0
Cfa023376 Carpinus fangiana HOM05D004630 ORTHO05D005727 1.2e-07 62.8 145 33.1
CSS0009392 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 2.1e-07 62.0 249 26.5
Mapoly0027s0070 Marchantia polymorpha HOM05D004630 ORTHO05D005727 2.8e-07 61.6 282 22.3
Os10g0170300 Oryza sativa ssp. japonica HOM05D004630 ORTHO05D005727 2.8e-07 61.6 742 21.6
Sabra03G0033900 Salix brachista HOM05D004630 ORTHO05D005727 3.6e-07 61.2 722 21.3
CiPaw.04G170700 Carya illinoinensis HOM05D004630 ORTHO05D005727 4.7e-07 60.8 717 22.0
MD16G1131900 Malus domestica HOM05D004630 ORTHO05D005727 4.7e-07 60.8 715 21.4
TAR636G2703 Trochodendron aralioides HOM05D004630 ORTHO05D005727 4.7e-07 60.8 724 21.3
Rhsim05G0234800 Rhododendron simsii HOM05D004630 ORTHO05D005727 8.1e-07 60.1 702 21.5
PGSC0003DMG400019762 Solanum tuberosum HOM05D006593 ORTHO05D008512 8.1e-07 60.1 32 84.4
CBR_g31522 Chara braunii HOM05D004630 ORTHO05D005727 1.4e-06 59.3 249 25.7
AUR62010786 Chenopodium quinoa HOM05D004630 ORTHO05D005727 3.1e-06 58.2 714 22.3
Cc03_g11340 Coffea canephora HOM05D004630 ORTHO05D005727 3.1e-06 58.2 751 20.9
Rhsim10G0128800 Rhododendron simsii HOM05D004630 ORTHO05D005727 3.1e-06 58.2 727 21.9
MSTRG.13783 Avicennia marina HOM05D004630 ORTHO05D005727 4.0e-06 57.8 762 20.6
COL.COLO4_38353 Corchorus olitorius HOM05D004630 ORTHO05D005727 5.2e-06 57.4 707 20.7
Hma1.2p1_0482F.1_g162689 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 6.8e-06 57.0 737 21.7
arahy.Tifrunner.gnm1.ann1.W5Q7UV Arachis hypogaea HOM05D004630 ORTHO05D005727 8.9e-06 56.6 737 20.1


User provided reference genes

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