Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 7.2e-110 400.6 204 100.0
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 2.7e-96 355.5 205 90.2
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 6.0e-96 354.4 204 88.7
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 2.5e-94 349.0 204 89.7
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 2.5e-94 349.0 204 89.7
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 2.5e-94 349.0 204 89.7
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 2.5e-94 349.0 204 89.7
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 5.6e-94 347.8 207 88.9
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 5.6e-94 347.8 204 89.2
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 4.7e-93 344.7 206 86.9
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 6.4e-90 334.3 209 87.1
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 1.4e-76 290.0 207 76.3
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 1.4e-76 290.0 207 73.9
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 2.9e-58 229.2 207 57.5
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 2.9e-58 229.2 179 64.2
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 2.9e-58 229.2 210 59.0
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 1.1e-57 227.3 208 58.7
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.1e-57 227.3 196 61.2
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 1.9e-57 226.5 210 58.1
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 7.1e-57 224.6 206 60.7
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 2.1e-56 223.0 206 60.7
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 2.1e-56 223.0 206 60.7
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 4.6e-56 221.9 196 60.7
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 4.6e-56 221.9 196 60.7
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 1.3e-55 220.3 207 58.9
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 2.3e-55 219.5 211 57.3
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 6.7e-55 218.0 206 58.7
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 1.1e-54 217.2 205 55.1
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 2.5e-54 216.1 205 53.2
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 3.3e-54 215.7 205 59.0
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 5.6e-54 214.9 205 59.0
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 5.6e-54 214.9 205 53.7
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 7.4e-54 214.5 201 57.2
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 7.4e-54 214.5 200 59.5
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 9.6e-54 214.2 209 56.5
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 1.3e-53 213.8 204 56.4
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 1.6e-53 213.4 211 55.5
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 2.1e-53 213.0 207 56.0
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 3.7e-53 212.2 209 56.5
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 3.7e-53 212.2 207 55.1
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 4.8e-53 211.8 204 56.4
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 6.2e-53 211.5 208 55.3
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 6.2e-53 211.5 207 55.6
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 1.1e-52 210.7 204 57.4
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 1.8e-52 209.9 204 55.4
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 2.4e-52 209.5 196 58.7
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 3.1e-52 209.1 160 64.4
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 3.1e-52 209.1 186 60.2
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 4.0e-52 208.8 207 53.6
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 6.9e-52 208.0 205 57.1
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 1.2e-51 207.2 200 58.0
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 2.6e-51 206.1 218 54.6
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 7.6e-51 204.5 203 54.7
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 1.3e-50 203.8 211 54.0
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 2.2e-50 203.0 209 55.0
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 2.2e-50 203.0 185 58.4
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 2.9e-50 202.6 161 65.8
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 2.9e-50 202.6 165 63.6
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 3.8e-50 202.2 208 54.3
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 3.8e-50 202.2 198 57.1
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 4.9e-50 201.8 198 57.1
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 4.9e-50 201.8 160 63.1
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 2.5e-49 199.5 183 57.4
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 2.5e-49 199.5 205 52.7
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 3.2e-49 199.1 158 66.5
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 3.2e-49 199.1 183 57.9
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 9.3e-49 197.6 178 58.4
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 1.6e-48 196.8 202 54.5
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 2.1e-48 196.4 160 63.1
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 2.1e-48 196.4 208 52.9
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 3.5e-48 195.7 204 52.9
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 4.6e-48 195.3 205 50.2
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 7.9e-48 194.5 202 51.5
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 1.3e-47 193.7 163 61.3
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 1.3e-47 193.7 196 53.6
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 3.0e-47 192.6 161 62.7
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 3.9e-47 192.2 215 50.2
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 1.9e-46 189.9 210 52.4
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 2.5e-46 189.5 197 51.8
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 1.3e-45 187.2 194 51.5
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.3e-45 187.2 160 61.2
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 2.1e-45 186.4 164 57.3
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 2.8e-45 186.0 170 57.1
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 3.7e-45 185.7 170 60.0
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 4.8e-45 185.3 149 65.8
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 6.3e-45 184.9 157 59.2
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 1.1e-44 184.1 204 50.5
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 3.1e-44 182.6 165 59.4
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 3.1e-44 182.6 201 52.2
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 5.3e-44 181.8 162 56.8
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 2.0e-43 179.9 158 58.2
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 1.0e-42 177.6 155 58.7
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 2.9e-42 176.0 155 56.1
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 8.5e-42 174.5 199 51.3
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 1.4e-41 173.7 206 47.6
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 7.2e-41 171.4 202 51.0
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 9.3e-41 171.0 92 92.4
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 2.3e-39 166.4 160 51.2
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 3.9e-39 165.6 119 79.0
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 5.1e-39 165.2 158 51.3
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 7.4e-38 161.4 180 47.8
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 7.4e-38 161.4 158 52.5
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 3.4e-35 152.5 177 46.3
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 1.2e-27 127.5 155 43.9
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 2.2e-21 106.7 156 40.4
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 4.1e-20 102.4 122 48.4
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 9.4e-17 91.3 146 32.2
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 2.7e-16 89.7 148 32.4
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 2.3e-15 86.7 146 34.9
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 3.3e-14 82.8 119 46.2
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 3.1e-12 76.3 151 35.8
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 7.0e-12 75.1 144 32.6
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 1.2e-11 74.3 153 30.1
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 1.0e-10 71.2 149 33.6
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 2.9e-10 69.7 73 50.7
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 6.5e-10 68.6 73 52.1


User provided reference genes

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