Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 0.0e+00 1087.8 528 100.0
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 6.1e-278 960.3 533 88.0
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 1.0e-277 959.5 529 87.9
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 1.0e-277 959.5 529 87.9
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 2.3e-277 958.4 523 89.3
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 2.0e-276 955.3 529 87.3
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 1.3e-275 952.6 529 87.1
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 2.3e-272 941.8 528 87.3
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.0e-268 928.7 526 86.5
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.3e-267 926.0 527 85.8
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 5.6e-263 910.6 531 84.9
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 7.3e-247 857.1 529 80.7
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 9.6e-239 830.1 521 78.5
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.3e-235 819.7 520 76.3
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 2.1e-217 759.2 538 68.4
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 3.9e-216 755.0 538 67.7
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 1.2e-212 743.4 534 67.4
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.3e-211 740.0 519 69.2
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.9e-210 736.1 534 67.4
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 1.9e-210 736.1 532 66.4
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 4.2e-210 734.9 539 67.0
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 9.4e-210 733.8 488 71.7
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.6e-209 731.9 542 67.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 6.1e-209 731.1 538 66.0
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 3.9e-208 728.4 517 67.9
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.5e-207 726.5 547 66.2
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 1.5e-207 726.5 534 66.5
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 1.5e-207 726.5 532 68.0
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 4.3e-207 724.9 532 66.2
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 7.4e-207 724.2 543 66.3
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 2.2e-206 722.6 511 68.3
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 2.8e-206 722.2 538 66.4
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 4.8e-206 721.5 525 67.0
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 6.3e-206 721.1 531 65.9
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.1e-205 720.3 546 66.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 4.1e-205 718.4 529 66.4
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 9.1e-205 717.2 525 66.7
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 3.4e-204 715.3 531 65.5
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 7.7e-204 714.1 535 65.6
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.0e-203 713.8 546 64.8
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 3.2e-202 708.8 513 66.9
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 7.2e-202 707.6 478 70.1
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 2.3e-200 702.6 520 65.6
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 8.8e-200 700.7 456 72.4
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.1e-199 700.3 455 71.0
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 9.7e-199 697.2 510 66.9
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 1.7e-198 696.4 472 67.6
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 1.7e-198 696.4 471 70.1
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 3.7e-198 695.3 480 70.2
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 8.2e-198 694.1 472 67.4
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.8e-197 693.0 511 65.8
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 5.3e-197 691.4 477 68.3
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.5e-196 689.9 498 66.3
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 7.7e-196 687.6 471 68.2
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.3e-195 686.8 457 69.6
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 3.8e-195 685.3 470 68.7
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 4.2e-194 681.8 512 63.9
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.5e-194 681.4 460 69.8
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 3.6e-193 678.7 430 74.2
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 3.9e-192 675.2 420 75.0
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 2.0e-191 672.9 514 65.0
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 3.3e-191 672.2 474 68.6
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.3e-190 670.2 461 68.5
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 3.7e-190 668.7 463 67.6
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 8.2e-190 667.5 502 64.7
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 2.0e-188 662.9 468 66.9
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 5.9e-188 661.4 503 65.8
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 7.7e-188 661.0 421 73.6
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.0e-187 660.6 490 64.3
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.7e-187 659.8 514 64.4
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.2e-187 659.4 421 74.1
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.0e-187 658.3 474 67.3
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 5.0e-187 658.3 500 64.2
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 5.0e-187 658.3 517 63.6
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 6.5e-187 657.9 462 66.9
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 5.5e-186 654.8 446 68.6
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 4.7e-185 651.7 481 64.0
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 1.8e-184 649.8 526 61.6
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 2.3e-184 649.4 469 64.8
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.7e-182 643.3 463 65.4
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 1.1e-181 640.6 418 71.5
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.6e-180 636.7 457 65.2
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 7.7e-180 634.4 480 63.5
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.5e-178 630.2 425 70.4
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 5.5e-178 628.2 503 61.2
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 9.4e-178 627.5 481 64.0
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 9.4e-178 627.5 454 64.8
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.3e-176 622.9 419 71.6
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.2e-175 620.5 430 67.9
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 8.3e-174 614.4 402 72.1
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.4e-173 612.8 477 60.4
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 6.6e-171 604.7 471 60.9
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 3.5e-164 582.4 418 66.0
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.4e-157 560.5 385 68.8
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 4.0e-152 542.3 352 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.7e-142 510.4 445 54.8
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 4.9e-142 508.8 559 48.7
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 3.3e-138 496.1 460 52.2
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 7.1e-133 478.4 523 49.1
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 2.4e-128 463.4 366 62.3
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 1.3e-126 457.6 502 45.4
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.2e-117 426.4 418 52.9
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 5.6e-106 389.0 440 49.3
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 2.9e-102 376.7 304 60.2
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.3e-99 367.9 467 43.0
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 5.9e-95 352.4 301 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.4e-93 347.8 444 41.4
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.6e-92 344.4 197 79.7
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 4.3e-90 336.3 528 36.7
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 2.4e-80 303.9 234 64.1
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 1.6e-76 291.2 185 71.4
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 3.7e-73 280.0 447 36.7
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.2e-68 265.0 245 58.0
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.5e-66 258.1 150 79.3
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.8e-65 253.8 150 78.0
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 5.3e-64 249.6 230 55.7
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 2.7e-60 237.3 218 52.3
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.1e-44 184.5 130 72.3
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 6.1e-44 183.0 403 31.8
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 2.3e-35 154.5 185 48.1
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 5.1e-30 136.7 159 53.5
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.4e-26 124.0 74 83.8
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 2.5e-21 107.8 151 42.4
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 4.9e-17 93.6 66 62.1
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.1e-13 82.4 46 73.9
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 1.1e-11 75.9 57 70.2
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 9.0e-11 72.8 282 24.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 1.5e-10 72.0 295 24.1
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 2.0e-10 71.6 296 23.3
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.6e-10 71.2 270 24.4
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 4.4e-10 70.5 274 24.1
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 9.9e-10 69.3 304 23.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.3e-09 68.9 140 25.7
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.3e-09 68.9 267 24.0
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.7e-09 68.6 320 22.2
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.7e-09 68.6 173 24.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.2e-09 68.2 307 21.2
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 3.8e-09 67.4 137 26.3
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 3.8e-09 67.4 137 26.3
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 4.9e-09 67.0 163 25.2
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 4.9e-09 67.0 140 25.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 6.4e-09 66.6 134 25.4
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.1e-08 65.9 137 24.8
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.9e-08 65.1 163 23.9
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.9e-08 65.1 139 24.5
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 2.4e-08 64.7 282 23.8
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.2e-08 64.3 274 23.7
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 4.2e-08 63.9 288 23.6
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 2.1e-07 61.6 132 23.5
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.5e-07 60.8 133 26.3
RcHm_v2.0_Chr2g0117431 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-06 58.9 104 35.6


User provided reference genes

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