Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 8.6e-301 1036.2 517 100.0
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 5.9e-257 890.6 490 91.8
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 6.3e-251 870.5 488 90.4
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 8.2e-251 870.2 490 90.0
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 1.8e-250 869.0 490 90.0
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 2.4e-250 868.6 490 90.4
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 2.2e-248 862.1 493 89.0
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 5.0e-248 860.9 488 89.8
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 7.5e-228 793.9 481 81.7
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 3.0e-213 745.3 388 94.6
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 1.2e-209 733.4 386 93.5
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 2.2e-203 712.6 390 90.0
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 9.5e-199 697.2 477 71.9
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 1.2e-198 696.8 423 78.5
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 2.1e-198 696.0 479 71.8
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 2.3e-197 692.6 477 71.7
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 5.2e-197 691.4 487 70.2
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 2.6e-196 689.1 447 75.6
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 4.4e-196 688.3 447 75.4
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 4.4e-196 688.3 439 75.6
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 9.8e-196 687.2 444 76.1
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 1.3e-195 686.8 425 76.0
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 1.3e-195 686.8 476 71.2
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 3.7e-195 685.3 447 74.9
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 4.9e-195 684.9 473 71.9
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 6.4e-195 684.5 423 77.1
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 5.4e-194 681.4 500 67.6
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 5.4e-194 681.4 420 76.4
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 9.2e-194 680.6 458 72.9
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 1.2e-193 680.2 436 73.6
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 1.6e-193 679.9 421 76.7
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 2.0e-193 679.5 420 76.9
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 2.0e-193 679.5 424 76.2
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 3.5e-193 678.7 420 77.1
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 3.5e-193 678.7 442 73.8
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 4.6e-193 678.3 421 75.5
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 3.0e-192 675.6 421 76.7
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 8.6e-192 674.1 428 74.5
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 1.1e-191 673.7 448 73.0
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 3.3e-191 672.2 519 65.7
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 9.5e-191 670.6 420 76.0
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 3.6e-190 668.7 475 70.7
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 1.1e-189 667.2 422 75.8
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 1.4e-189 666.8 453 71.3
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 4.0e-189 665.2 490 68.4
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 8.9e-189 664.1 461 71.6
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 1.2e-188 663.7 420 75.5
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 2.0e-188 662.9 459 71.5
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 3.4e-188 662.1 448 72.8
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 3.4e-188 662.1 474 68.1
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 7.5e-188 661.0 430 73.5
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 2.4e-186 656.0 484 67.1
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 4.1e-186 655.2 422 73.9
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 5.4e-186 654.8 432 72.9
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 5.4e-186 654.8 443 72.7
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 1.2e-185 653.7 437 71.6
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 2.1e-185 652.9 527 63.8
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 4.6e-185 651.7 422 73.9
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 3.0e-184 649.0 438 72.4
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 6.6e-184 647.9 423 73.5
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 8.6e-184 647.5 421 73.2
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 3.3e-183 645.6 423 73.0
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 6.2e-182 641.3 364 89.6
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 8.9e-181 637.5 450 69.8
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 8.9e-181 637.5 425 71.5
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 4.1e-178 628.6 358 85.5
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 7.1e-178 627.9 454 68.5
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 9.2e-178 627.5 433 72.1
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 2.3e-176 622.9 381 78.2
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 1.6e-174 616.7 472 66.3
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 8.1e-174 614.4 400 74.2
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 1.4e-173 613.6 420 70.2
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 4.0e-173 612.1 440 68.6
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 5.8e-172 608.2 477 65.2
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 9.9e-172 607.4 383 76.0
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 6.4e-171 604.7 380 76.6
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 1.0e-168 597.4 465 65.6
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 1.1e-162 577.4 436 66.7
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 7.1e-162 574.7 475 61.5
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 2.3e-160 569.7 344 79.7
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 1.1e-157 560.8 414 66.4
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 1.4e-157 560.5 434 64.5
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 3.1e-157 559.3 422 65.4
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 1.2e-156 557.4 399 69.2
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.4e-154 550.4 443 61.9
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 6.7e-152 541.6 423 64.8
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 9.6e-151 537.7 410 66.3
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 6.2e-150 535.0 457 59.3
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 4.5e-148 528.9 480 57.7
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 2.5e-143 513.1 313 77.3
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 4.2e-138 495.7 429 59.0
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 1.3e-123 447.6 489 50.5
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 7.7e-116 421.8 463 48.8
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 1.3e-107 394.4 242 75.2
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 5.5e-106 389.0 246 75.2
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 2.2e-94 350.5 438 45.4
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 8.3e-86 322.0 202 73.8
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 2.0e-84 317.4 264 59.8
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 1.9e-82 310.8 292 55.8
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 7.3e-82 308.9 292 55.8
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 2.4e-77 293.9 230 66.1
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 5.6e-74 282.7 179 77.7
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 1.6e-68 264.6 211 63.0
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 5.6e-58 229.6 450 37.3
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 5.3e-56 223.0 312 46.2
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 1.7e-51 208.0 183 57.9
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 9.0e-48 195.7 115 80.9
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 5.1e-35 153.3 93 76.3
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 2.0e-31 141.4 89 76.4
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 1.3e-27 128.6 88 70.5
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 8.2e-25 119.4 126 56.3
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 5.9e-15 86.7 61 65.6
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 1.3e-09 68.9 43 76.7
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 7.7e-07 59.7 244 23.8


User provided reference genes

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