Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 5.5e-198 694.1 351 100.0
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 4.1e-185 651.4 351 92.9
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 6.5e-183 644.0 351 92.0
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 8.5e-183 643.7 352 92.3
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.6e-181 639.4 351 92.0
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 2.1e-181 639.0 351 92.3
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.7e-178 629.4 353 90.9
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.2e-176 623.2 353 90.7
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.0e-175 620.2 353 90.4
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.0e-175 620.2 353 90.4
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 1.3e-175 619.8 351 88.6
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.2e-157 560.1 352 80.7
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 9.1e-153 543.9 349 75.6
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.3e-151 540.0 351 76.6
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.7e-151 539.7 351 76.6
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 1.7e-151 539.7 349 75.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 2.2e-151 539.3 351 76.1
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 5.2e-148 528.1 353 74.5
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 9.8e-147 523.9 346 74.0
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.7e-146 523.1 350 74.3
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 3.7e-146 521.9 346 74.9
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 6.3e-146 521.2 391 67.8
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.4e-145 520.0 348 73.6
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 2.4e-145 519.2 354 74.6
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.4e-145 519.2 348 74.1
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 4.1e-145 518.5 353 73.4
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 7.0e-145 517.7 346 74.9
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 2.7e-144 515.8 348 74.1
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 3.5e-144 515.4 348 74.1
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 3.5e-144 515.4 345 73.6
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 4.5e-144 515.0 346 73.4
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 5.9e-144 514.6 301 82.1
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 5.9e-144 514.6 345 74.8
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 5.9e-144 514.6 305 81.0
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.0e-143 513.8 359 72.1
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.0e-143 513.8 363 71.1
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.7e-143 513.1 345 72.5
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 2.3e-143 512.7 312 79.5
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.9e-143 512.3 301 81.7
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.9e-143 512.3 371 69.5
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.9e-142 509.6 345 73.3
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 1.9e-142 509.6 312 78.8
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 2.5e-142 509.2 333 74.5
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 5.5e-142 508.1 349 72.8
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 7.2e-142 507.7 301 82.1
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.2e-141 506.9 344 73.0
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.2e-141 506.9 344 72.1
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 2.1e-141 506.1 348 71.6
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 2.1e-141 506.1 344 73.3
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 2.1e-141 506.1 354 71.5
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 2.8e-141 505.8 312 78.2
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 2.8e-141 505.8 312 77.9
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 3.6e-141 505.4 308 79.9
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.0e-140 503.8 351 72.4
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.4e-140 503.4 348 72.1
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.3e-140 502.7 303 80.5
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.3e-140 502.7 355 71.5
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 4.0e-140 501.9 345 72.5
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 4.0e-140 501.9 305 79.7
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 5.2e-140 501.5 303 80.9
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 6.8e-140 501.1 345 72.5
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 6.8e-140 501.1 343 73.2
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 8.9e-140 500.7 310 76.8
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.5e-139 500.0 344 72.1
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 1.5e-139 500.0 351 70.7
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 3.7e-138 495.4 303 79.5
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.4e-137 492.7 318 77.0
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 2.4e-137 492.7 301 78.7
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.6e-136 490.0 324 73.1
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.7e-136 489.2 360 68.1
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.5e-136 488.8 310 75.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 4.5e-136 488.4 360 68.3
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.6e-135 484.6 312 77.2
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.8e-132 476.5 390 64.4
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 5.8e-131 471.5 394 62.9
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.7e-130 469.9 305 75.4
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 4.9e-130 468.4 304 73.0
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 8.6e-127 457.6 327 69.1
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.5e-126 456.8 304 74.7
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 2.5e-126 456.1 281 77.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.3e-122 443.7 325 70.5
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.1e-120 436.4 302 67.2
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.1e-120 436.4 302 67.2
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 6.0e-120 434.9 328 65.9
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 6.6e-119 431.4 305 66.6
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 1.2e-117 427.2 360 64.4
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 1.6e-117 426.8 341 64.2
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 6.2e-117 424.9 300 66.0
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.0e-115 419.9 292 72.3
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 8.3e-114 414.5 316 67.4
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 5.4e-113 411.8 307 66.8
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 2.4e-108 396.4 369 59.6
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 2.4e-100 369.8 263 71.9
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 3.4e-99 365.9 280 66.1
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.6e-93 347.1 356 50.3
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 3.6e-93 345.9 250 70.4
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 2.9e-90 336.3 308 52.3
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.3e-82 310.8 258 60.5
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.6e-80 302.4 184 79.3
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 6.0e-80 302.0 309 50.5
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.0e-79 299.7 243 65.4
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.9e-78 297.0 303 55.4
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 3.1e-76 289.7 226 65.0
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.0e-75 287.0 243 58.4
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.7e-66 257.3 204 64.2
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.1e-64 250.4 239 59.8
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 1.2e-59 234.6 124 87.1
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 3.4e-59 233.0 124 86.3
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.7e-54 215.7 123 78.9
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.7e-54 215.7 123 78.9
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 8.0e-48 195.3 150 68.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 1.8e-47 194.1 182 59.3
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 2.9e-42 176.8 144 69.4
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.4e-38 163.3 122 63.1
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 5.7e-38 162.5 120 73.3
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 4.8e-37 159.5 301 35.5
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 3.5e-35 153.3 102 77.5
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.8e-34 149.8 307 30.9
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 7.2e-33 145.6 117 68.4
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 3.6e-32 143.3 78 85.9
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.8e-28 131.0 102 69.6
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 3.5e-27 126.7 114 63.2
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 5.0e-26 122.9 186 38.2
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 1.9e-25 120.9 66 84.8
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.4e-22 110.2 102 56.9
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.8e-20 104.4 131 48.1
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.0e-18 98.6 185 35.1
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.7e-13 80.1 64 65.6
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.1e-12 78.6 45 82.2
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 7.3e-09 65.9 233 27.9
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 3.6e-08 63.5 239 27.6
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 4.7e-08 63.2 233 27.5
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 2.3e-07 60.8 231 27.7
Carub.0007s0712 Capsella rubella HOM05D001625 ORTHO05D008114 3.1e-07 60.5 231 25.1
Cfa018529 Carpinus fangiana HOM05D001625 ORTHO05D008114 3.1e-07 60.5 244 26.2
Psat5g077160 Pisum sativum HOM05D001625 ORTHO05D008114 5.2e-07 59.7 235 24.3
AT4G33360 Arabidopsis thaliana HOM05D001625 ORTHO05D008114 8.9e-07 58.9 238 24.8
CiPaw.15G061300 Carya illinoinensis HOM05D001625 ORTHO05D008114 1.2e-06 58.5 234 26.1
arahy.Tifrunner.gnm1.ann1.SS1ETW Arachis hypogaea HOM05D001625 ORTHO05D008114 1.5e-06 58.2 230 27.4
arahy.Tifrunner.gnm1.ann1.GU4KEX Arachis hypogaea HOM05D001625 ORTHO05D008114 2.0e-06 57.8 230 27.4
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 3.4e-06 57.0 59 50.8
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 3.4e-06 57.0 231 24.7
Lalb_Chr23g0267001 Lupinus albus HOM05D001625 ORTHO05D008114 4.4e-06 56.6 238 25.6
Glyma.06G038700 Glycine max HOM05D001625 ORTHO05D008114 7.5e-06 55.8 233 27.0


User provided reference genes

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