Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 1.9e-156 555.8 291 100.0
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 3.0e-133 478.8 293 88.7
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 3.9e-133 478.4 292 88.7
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 1.1e-132 476.9 293 88.4
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.3e-132 475.3 293 88.1
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.4e-130 469.9 292 87.0
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 2.6e-129 465.7 292 86.6
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 2.6e-129 465.7 292 86.6
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.3e-128 463.4 292 86.3
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 2.7e-126 455.7 292 84.6
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 3.4e-121 438.7 293 82.9
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 3.4e-121 438.7 293 82.9
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.3e-109 399.4 273 80.2
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.1e-106 390.6 295 73.9
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 3.1e-106 389.0 295 73.2
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.3e-99 367.1 293 72.0
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 1.8e-93 346.7 293 65.9
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 9.7e-92 340.9 300 65.0
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.3e-91 340.5 294 65.0
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 1.7e-91 340.1 289 66.1
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 2.2e-91 339.7 295 65.8
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 8.2e-91 337.8 295 65.4
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 8.2e-91 337.8 295 65.4
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 5.3e-90 335.1 292 65.4
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 5.3e-90 335.1 289 65.4
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 7.0e-90 334.7 297 64.6
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 9.1e-90 334.3 297 64.3
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.2e-89 334.0 298 64.4
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 1.2e-89 334.0 295 64.7
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.6e-89 333.6 300 63.3
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 2.0e-89 333.2 295 64.4
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.6e-89 332.8 293 63.5
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 3.5e-89 332.4 296 63.9
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.5e-89 332.0 293 63.5
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 5.9e-89 331.6 292 64.0
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 5.9e-89 331.6 295 64.1
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 5.9e-89 331.6 295 64.1
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 7.7e-89 331.3 293 63.5
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 7.7e-89 331.3 294 66.3
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.7e-88 330.1 295 66.4
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.9e-88 329.3 293 63.1
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 3.8e-88 328.9 288 63.9
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 5.0e-88 328.6 301 61.5
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 5.0e-88 328.6 280 65.4
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 1.5e-87 327.0 302 63.2
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.9e-87 326.6 301 63.1
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 4.2e-87 325.5 294 65.0
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 4.2e-87 325.5 293 65.5
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 5.5e-87 325.1 293 64.2
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 5.5e-87 325.1 297 62.6
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 5.5e-87 325.1 298 64.4
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 5.5e-87 325.1 295 65.1
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 5.5e-87 325.1 295 66.4
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 9.4e-87 324.3 252 69.4
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 9.4e-87 324.3 293 60.8
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.2e-86 323.9 297 61.6
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 1.6e-86 323.6 264 68.9
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 2.7e-86 322.8 308 60.4
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 6.1e-86 321.6 295 63.4
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 1.0e-85 320.9 313 61.3
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.0e-85 320.9 296 62.2
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 1.0e-85 320.9 293 61.4
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 1.0e-85 320.9 258 69.0
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 2.3e-85 319.7 313 61.3
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 3.0e-85 319.3 265 68.7
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 3.0e-85 319.3 305 61.0
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 5.2e-85 318.5 294 64.3
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 6.7e-85 318.2 233 72.1
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 1.2e-84 317.4 257 67.7
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 1.2e-84 317.4 299 63.2
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 2.6e-84 316.2 291 61.9
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 5.7e-84 315.1 244 70.5
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 7.5e-84 314.7 245 70.6
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 7.5e-84 314.7 298 60.4
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 7.5e-84 314.7 292 61.0
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 9.7e-84 314.3 232 72.4
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.7e-83 313.5 254 68.1
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.2e-83 313.2 265 67.9
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 2.8e-83 312.8 294 62.2
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.8e-83 312.8 292 62.7
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 2.8e-83 312.8 274 64.6
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 3.7e-83 312.4 249 66.7
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 6.3e-83 311.6 296 60.1
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 2.4e-82 309.7 263 67.7
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 3.1e-82 309.3 299 60.9
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 4.1e-82 308.9 275 64.0
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 7.0e-82 308.1 252 68.3
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 7.0e-82 308.1 249 67.1
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.6e-81 307.0 292 61.6
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.6e-81 307.0 314 57.3
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.6e-81 307.0 251 67.3
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 7.7e-81 304.7 293 61.8
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 7.7e-81 304.7 221 73.8
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 2.9e-80 302.8 333 55.9
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.9e-79 300.1 280 60.4
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.1e-78 296.6 233 67.4
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 3.6e-78 295.8 296 56.8
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 6.1e-78 295.0 217 72.4
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 6.1e-78 295.0 229 69.4
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 6.1e-78 295.0 221 71.0
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.4e-77 293.9 246 63.8
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 3.0e-77 292.7 219 70.3
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 8.8e-77 291.2 291 59.5
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 8.8e-77 291.2 250 65.6
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.2e-76 290.8 284 60.2
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 2.0e-76 290.0 286 57.7
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 7.5e-76 288.1 231 67.5
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.2e-75 286.6 241 64.3
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 6.3e-75 285.0 275 61.8
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 8.3e-75 284.6 256 62.9
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.4e-74 283.9 283 57.2
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 1.4e-74 283.9 221 68.8
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 4.5e-73 278.9 256 60.9
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 1.3e-72 277.3 257 61.1
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 1.3e-72 277.3 242 61.6
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 3.8e-72 275.8 278 58.6
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.2e-70 270.8 258 61.6
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 8.0e-70 268.1 294 54.4
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 3.0e-69 266.2 233 62.7
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 6.8e-69 265.0 231 62.8
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 1.2e-68 264.2 227 65.6
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 1.7e-67 260.4 209 66.0
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 3.2e-66 256.1 233 60.5
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 1.7e-64 250.4 207 64.7
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.7e-64 250.4 222 62.6
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 5.2e-61 238.8 231 56.7
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.2e-60 237.7 219 63.5
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 1.1e-58 231.1 208 62.5
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 1.4e-58 230.7 236 54.2
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 2.4e-58 229.9 251 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 3.2e-58 229.6 237 55.7
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 9.2e-58 228.0 163 73.6
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 3.5e-57 226.1 172 68.0
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 4.6e-57 225.7 229 54.6
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.4e-53 214.2 230 53.9
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 2.4e-50 203.4 182 62.6
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.5e-47 193.4 145 69.0
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 1.2e-46 191.0 228 48.2
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 1.4e-42 177.6 239 41.4
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 2.7e-41 173.3 176 58.5
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.1e-37 161.4 114 70.2
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 2.9e-35 153.3 127 65.4
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 2.4e-34 150.2 158 56.3
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 1.1e-29 134.8 125 60.8
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.9e-29 132.1 109 66.1
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 1.9e-26 124.0 114 57.9
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 6.0e-25 119.0 265 34.0
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.5e-20 104.4 153 47.1
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 6.4e-19 99.0 247 31.6
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 5.4e-18 95.9 63 77.8
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.4e-13 81.3 118 48.3
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 2.0e-12 77.4 62 67.7
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 1.0e-08 65.1 182 31.9
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 4.3e-07 59.7 221 27.1
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 9.6e-07 58.5 208 25.0
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 1.3e-06 58.2 220 27.7
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 1.3e-06 58.2 186 28.0
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 1.6e-06 57.8 172 27.9
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 2.1e-06 57.4 189 27.0
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 2.1e-06 57.4 189 27.0
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 2.8e-06 57.0 213 27.7
TPR.G23891 Trifolium pratense HOM05D000764 ORTHO05D002819 2.8e-06 57.0 168 28.6
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 4.8e-06 56.2 182 25.3
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 6.2e-06 55.8 208 25.0
MELO3C017270.2 Cucumis melo HOM05D000764 ORTHO05D002819 6.2e-06 55.8 172 27.3
Peaxi162Scf00017g03138 Petunia axillaris HOM05D000764 ORTHO05D002819 6.2e-06 55.8 201 24.9
QL10p022070 Quercus lobata HOM05D000764 ORTHO05D002819 6.2e-06 55.8 185 27.0
FAN13G0269 Fragaria x ananassa HOM05D000764 ORTHO05D002006 8.2e-06 55.5 190 26.3
RcHm_v2.0_Chr7g0184201 Rosa chinensis HOM05D000764 ORTHO05D002819 8.2e-06 55.5 190 26.3


User provided reference genes

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