Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.7e-72 276.6 222 100.0
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 5.2e-53 211.8 226 66.8
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 8.9e-53 211.1 228 80.3
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 1.5e-52 210.3 226 80.5
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.5e-52 210.3 228 78.5
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 2.0e-52 209.9 226 79.2
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 9.8e-52 207.6 227 57.3
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.2e-51 206.5 227 63.4
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.2e-51 206.5 245 62.0
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 2.2e-51 206.5 227 61.2
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.9e-51 206.1 228 58.8
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 4.9e-51 205.3 245 60.4
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 6.4e-51 204.9 226 66.4
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 8.3e-51 204.5 226 69.9
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.4e-50 203.8 227 59.5
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 4.1e-50 202.2 226 71.2
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.2e-49 200.7 227 69.6
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 2.0e-49 199.9 226 75.7
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 2.7e-49 199.5 224 65.2
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 3.5e-49 199.1 227 60.4
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 4.6e-49 198.7 227 52.0
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 7.8e-49 198.0 227 56.8
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 7.8e-49 198.0 227 57.7
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.7e-48 196.8 227 64.3
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.7e-48 196.8 227 60.4
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 3.0e-48 196.1 227 58.1
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 3.0e-48 196.1 226 54.9
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 3.0e-48 196.1 227 58.1
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 3.9e-48 195.7 227 54.6
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 3.9e-48 195.7 227 63.4
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 3.9e-48 195.7 227 58.1
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 5.0e-48 195.3 227 59.5
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 5.0e-48 195.3 229 58.1
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 6.6e-48 194.9 227 63.4
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 8.6e-48 194.5 227 55.5
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 8.6e-48 194.5 228 57.5
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 8.6e-48 194.5 227 64.3
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.1e-47 194.1 223 65.9
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.5e-47 193.7 226 62.8
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.9e-47 193.4 227 57.7
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.9e-47 193.4 226 62.8
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 2.5e-47 193.0 228 57.0
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.5e-47 193.0 227 58.1
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 2.5e-47 193.0 227 59.9
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 2.5e-47 193.0 227 62.6
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.3e-47 192.2 227 61.2
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.3e-47 192.2 227 61.2
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.6e-47 191.8 231 64.1
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.2e-46 190.7 227 57.3
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 1.2e-46 190.7 227 56.8
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.6e-46 190.3 227 67.0
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.6e-46 190.3 226 62.8
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.6e-46 190.3 227 59.0
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.1e-46 189.9 231 62.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.1e-46 189.9 225 58.2
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 2.8e-46 189.5 228 61.8
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 2.8e-46 189.5 226 58.8
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 3.6e-46 189.1 227 47.6
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 3.6e-46 189.1 227 58.6
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 6.2e-46 188.3 227 63.0
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 6.2e-46 188.3 224 62.1
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 8.0e-46 188.0 226 55.8
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.0e-45 187.6 223 62.3
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.0e-45 187.6 227 63.0
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.3e-45 186.4 228 61.4
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 2.3e-45 186.4 233 57.9
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 2.3e-45 186.4 227 62.6
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 3.1e-45 186.0 227 63.4
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 3.1e-45 186.0 227 59.5
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 4.0e-45 185.7 227 59.0
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 5.2e-45 185.3 232 56.9
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 6.8e-45 184.9 227 74.4
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 6.8e-45 184.9 226 62.4
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.2e-44 184.1 228 68.9
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.2e-44 184.1 236 66.1
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 1.2e-44 184.1 227 61.7
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.5e-44 183.7 227 66.1
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 1.5e-44 183.7 226 64.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.4e-44 182.2 226 69.5
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 4.4e-44 182.2 227 66.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 5.8e-44 181.8 223 56.5
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 5.8e-44 181.8 231 58.9
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 9.8e-44 181.0 227 66.1
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 9.8e-44 181.0 226 69.0
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.2e-43 179.9 226 65.5
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.2e-43 179.9 227 64.8
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 2.9e-43 179.5 227 64.8
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 4.9e-43 178.7 224 64.7
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 1.4e-42 177.2 228 63.2
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 2.4e-42 176.4 222 58.6
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 2.4e-42 176.4 227 60.4
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 5.4e-42 175.3 271 53.5
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 5.4e-42 175.3 226 65.0
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.2e-41 174.1 134 67.9
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 2.0e-41 173.3 226 58.0
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.7e-41 172.9 227 53.7
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 3.0e-40 169.5 227 69.6
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.9e-40 169.1 231 52.4
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.5e-39 167.2 225 58.7
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.9e-39 166.8 227 45.4
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 1.2e-38 164.1 233 56.7
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 3.1e-37 159.5 233 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.2e-36 157.5 228 61.0
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 7.5e-36 154.8 87 81.6
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 3.7e-35 152.5 228 48.2
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 6.4e-35 151.8 228 50.0
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.1e-34 151.0 206 57.8
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.4e-34 150.6 226 54.9
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.9e-34 150.2 231 58.0
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.2e-33 147.5 228 51.3
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.6e-33 147.1 228 50.9
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 4.6e-33 145.6 209 62.7
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.5e-31 140.6 329 41.9
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.9e-31 140.2 223 40.4
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 2.5e-31 139.8 230 42.6
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.8e-27 125.9 63 88.9
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 5.4e-26 122.1 67 89.6
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 2.1e-25 120.2 67 89.6
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 3.5e-25 119.4 211 51.7
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.4e-21 107.5 86 61.6
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 4.0e-21 105.9 206 48.5
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 6.9e-21 105.1 188 53.2
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.5e-20 104.0 66 72.7
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.7e-19 100.5 70 68.6
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 7.1e-18 95.1 106 45.3
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 2.3e-16 90.1 110 44.5
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 2.8e-14 83.2 112 44.6
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 4.5e-12 75.9 40 92.5
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 4.2e-10 69.3 86 47.7
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 1.9e-07 60.5 78 43.6


User provided reference genes

Program Settings