Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 2.1e-100 369.0 186 100.0
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 4.9e-89 331.3 183 90.7
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 1.3e-86 323.2 190 88.4
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 1.1e-85 320.1 188 87.8
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 1.1e-85 320.1 188 87.8
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 1.1e-85 320.1 188 87.8
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.6e-84 316.2 190 86.8
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.1e-83 313.5 171 91.8
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 5.3e-83 311.2 184 84.2
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 2.0e-82 309.3 173 89.0
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 5.8e-82 307.8 186 84.9
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 2.2e-81 305.8 187 85.0
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 5.1e-78 294.7 191 79.1
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 2.5e-69 265.8 185 72.4
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 3.0e-62 242.3 192 65.6
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 2.0e-61 239.6 181 65.2
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 7.4e-61 237.7 188 64.9
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 2.8e-60 235.7 172 68.6
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 8.2e-60 234.2 172 68.6
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 8.2e-60 234.2 184 64.1
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.8e-59 233.0 191 62.8
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 5.3e-59 231.5 181 66.3
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 1.2e-58 230.3 183 63.9
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.5e-58 229.9 192 62.0
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 5.9e-58 228.0 170 67.6
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 5.9e-58 228.0 189 61.9
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 7.7e-58 227.6 188 61.7
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 1.0e-57 227.3 186 63.4
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 6.5e-57 224.6 193 61.1
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 8.5e-57 224.2 187 61.0
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 8.5e-57 224.2 188 61.2
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 1.4e-56 223.4 172 64.0
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 1.9e-56 223.0 182 62.1
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 2.5e-56 222.6 173 67.1
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 3.2e-56 222.2 168 64.9
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 7.2e-56 221.1 186 59.7
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 9.4e-56 220.7 187 60.4
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 9.4e-56 220.7 172 64.5
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 9.4e-56 220.7 191 62.8
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 1.2e-55 220.3 188 58.5
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.6e-55 219.9 192 60.9
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.6e-55 219.9 186 61.3
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 2.1e-55 219.5 186 61.3
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 2.7e-55 219.2 194 60.3
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 2.7e-55 219.2 182 61.0
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 3.6e-55 218.8 193 59.6
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 4.7e-55 218.4 179 63.7
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 4.7e-55 218.4 171 63.7
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 4.7e-55 218.4 175 63.4
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 6.1e-55 218.0 191 61.3
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 7.9e-55 217.6 187 59.4
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 7.9e-55 217.6 187 61.0
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 7.9e-55 217.6 193 59.1
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 1.0e-54 217.2 191 60.2
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 1.4e-54 216.9 192 60.9
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.8e-54 216.5 181 61.9
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 2.3e-54 216.1 169 63.9
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 3.0e-54 215.7 192 59.4
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 5.1e-54 214.9 193 58.5
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 5.1e-54 214.9 175 61.7
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 6.7e-54 214.5 187 58.3
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 6.7e-54 214.5 175 62.3
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 8.8e-54 214.2 193 58.5
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.5e-53 213.4 194 59.8
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 2.0e-53 213.0 171 61.4
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 1.7e-52 209.9 173 59.5
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 2.8e-52 209.1 190 56.8
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 4.8e-52 208.4 193 54.4
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 4.1e-51 205.3 188 58.0
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 7.0e-51 204.5 173 60.7
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 9.1e-51 204.1 196 55.1
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 1.5e-50 203.4 168 58.3
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 3.5e-50 202.2 169 62.1
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 4.5e-50 201.8 136 72.1
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 5.9e-50 201.4 149 65.1
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 7.7e-50 201.1 164 61.0
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 2.9e-49 199.1 165 61.8
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 1.4e-48 196.8 170 55.9
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 1.9e-48 196.4 153 60.1
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 7.2e-48 194.5 145 64.8
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.2e-47 193.7 167 56.9
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.1e-47 193.0 186 52.7
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 2.7e-47 192.6 167 55.7
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 2.7e-47 192.6 152 59.2
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 1.4e-46 190.3 148 59.5
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.8e-46 189.9 148 58.8
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.8e-46 189.9 148 58.8
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 3.0e-46 189.1 147 61.2
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 3.0e-46 189.1 296 40.9
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.1e-45 187.2 135 62.2
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.5e-45 186.8 147 57.8
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 5.7e-45 184.9 145 60.0
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 7.4e-45 184.5 180 57.2
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 7.0e-43 177.9 139 58.3
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 1.6e-39 166.8 127 66.9
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 6.1e-39 164.9 192 52.6
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 1.5e-37 160.2 185 42.2
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 3.3e-37 159.1 127 63.8
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.4e-35 153.7 108 69.4
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.6e-34 150.2 137 51.8
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 2.9e-33 146.0 157 45.2
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.9e-32 143.3 108 63.0
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 4.2e-32 142.1 118 51.7
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 5.2e-30 135.2 92 68.5
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 2.8e-28 129.4 151 45.7
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.1e-27 127.5 122 53.3
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 1.2e-26 124.0 106 54.7
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.3e-20 104.0 100 48.0
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 1.1e-16 90.9 126 38.9
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 1.9e-16 90.1 120 43.3
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 2.5e-16 89.7 81 55.6
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 3.6e-15 85.9 140 37.1
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 9.2e-11 71.2 64 62.5
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 4.7e-07 58.9 120 26.7


User provided reference genes

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