Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 4.0e-254 880.9 446 100.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.4e-214 748.8 405 92.3
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 6.5e-212 740.7 405 92.1
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.2e-210 736.5 405 91.6
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 3.1e-206 721.8 406 90.4
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.0e-205 719.2 447 84.3
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 6.5e-204 714.1 387 92.2
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 9.4e-203 710.3 407 89.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 4.6e-202 708.0 406 89.2
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 6.1e-202 707.6 407 89.2
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 6.1e-202 707.6 407 89.2
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.5e-200 703.0 405 87.2
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 6.5e-196 687.6 405 86.9
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.2e-194 683.3 405 83.5
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.7e-180 636.3 407 78.4
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 8.5e-180 634.0 414 78.5
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.5e-179 632.5 403 79.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 5.5e-179 631.3 403 78.9
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 4.7e-178 628.2 403 78.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.0e-177 627.1 403 78.4
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.8e-177 626.3 404 78.2
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.3e-175 620.2 429 74.6
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.6e-173 613.2 436 73.9
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.9e-172 609.0 404 74.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 3.8e-172 608.6 404 75.0
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 3.8e-172 608.6 402 74.6
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.1e-171 607.1 404 74.5
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.5e-171 605.9 404 74.5
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 7.2e-171 604.4 406 74.1
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 3.6e-170 602.1 404 74.5
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 4.7e-170 601.7 314 94.9
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.8e-169 599.7 404 74.5
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 4.0e-169 598.6 406 73.6
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.0e-169 598.6 405 74.6
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.2e-169 598.2 404 74.5
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.0e-168 596.3 372 80.9
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 2.6e-168 595.9 404 73.0
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 4.4e-168 595.1 404 73.0
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 7.5e-168 594.3 405 73.3
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 9.8e-168 594.0 403 74.7
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 6.3e-167 591.3 418 69.9
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.8e-166 589.7 403 73.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.4e-166 589.3 407 72.5
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 4.1e-166 588.6 404 72.8
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 4.1e-166 588.6 405 71.9
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.2e-165 587.0 399 73.7
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.2e-165 587.0 403 73.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.3e-164 582.8 403 73.0
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.9e-164 582.4 403 72.2
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 2.9e-164 582.4 405 72.8
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 5.0e-164 581.6 403 72.5
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 8.6e-164 580.9 374 76.5
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 2.5e-163 579.3 407 72.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 4.2e-163 578.6 347 79.8
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.8e-162 575.9 405 71.4
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 4.7e-162 575.1 403 71.7
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 6.1e-162 574.7 415 69.2
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 8.0e-162 574.3 403 72.7
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.0e-161 573.9 404 70.5
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.8e-161 573.2 358 77.9
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.8e-161 573.2 403 70.5
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.3e-161 572.8 405 70.4
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 3.0e-161 572.4 422 69.4
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 3.0e-161 572.4 413 70.2
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.0e-161 572.4 405 70.6
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 4.0e-161 572.0 406 71.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 4.0e-161 572.0 385 73.8
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 5.2e-161 571.6 404 69.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 6.8e-161 571.2 365 76.7
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 8.9e-161 570.9 404 71.3
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 8.9e-161 570.9 405 69.9
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 2.0e-160 569.7 403 70.2
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.6e-160 569.3 406 71.2
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.4e-160 568.9 405 70.4
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 5.7e-160 568.2 408 70.6
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.3e-159 567.0 426 68.1
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 4.1e-158 562.0 377 73.7
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 7.0e-158 561.2 403 68.5
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 9.2e-158 560.8 405 68.4
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.6e-157 560.1 403 69.2
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 2.7e-157 559.3 347 76.7
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.5e-157 558.9 403 71.0
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 4.5e-157 558.5 343 78.7
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 5.9e-157 558.1 384 72.1
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 5.9e-157 558.1 403 69.5
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 7.8e-157 557.8 410 69.3
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.3e-156 557.0 355 75.5
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 2.9e-156 555.8 347 76.1
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.6e-154 550.1 436 65.1
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.0e-153 547.4 403 69.2
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 2.3e-153 546.2 403 69.7
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 3.1e-153 545.8 403 69.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 7.5e-152 541.2 391 70.3
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 6.4e-151 538.1 405 67.7
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 8.3e-151 537.7 405 66.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 1.2e-149 533.9 327 79.2
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.3e-148 529.6 376 71.0
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 3.0e-148 529.3 378 71.4
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 8.6e-148 527.7 361 72.6
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 3.3e-147 525.8 344 74.1
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 5.6e-147 525.0 314 79.6
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 9.5e-147 524.2 371 70.1
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.1e-146 523.1 360 70.3
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.4e-145 520.4 425 64.9
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.8e-145 520.0 361 71.7
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 8.9e-145 517.7 368 68.5
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.4e-144 515.8 356 73.0
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.7e-143 513.5 400 65.5
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.7e-143 513.5 348 71.0
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.1e-141 506.5 467 58.2
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.0e-140 504.2 356 71.9
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.3e-140 503.1 375 65.3
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.8e-137 493.4 321 79.1
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.0e-137 492.3 406 65.0
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 8.9e-137 491.1 573 48.9
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 3.3e-131 472.6 370 63.8
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.6e-130 470.3 346 67.1
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 6.2e-130 468.4 292 79.1
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.8e-114 415.6 364 62.1
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 7.0e-73 278.9 194 74.2
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 3.0e-68 263.5 147 84.4
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 5.7e-67 259.2 373 43.7
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.6e-61 241.1 225 55.1
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 4.4e-59 233.0 307 48.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.2e-55 220.7 190 63.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 6.1e-53 212.6 147 73.5
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.5e-43 181.4 112 77.7
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.0e-36 158.7 112 70.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-33 148.3 194 46.4
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.6e-32 144.8 390 28.7
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.1e-25 122.1 84 70.2
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.6e-24 118.2 80 67.5
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-19 102.1 53 88.7
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 2.9e-10 70.9 95 44.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 4.9e-10 70.1 45 68.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 3.9e-07 60.5 55 50.9


User provided reference genes

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