Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 4.9e-108 394.4 193 100.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 2.1e-106 389.0 193 97.9
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 3.5e-106 388.3 193 97.4
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 1.0e-105 386.7 193 96.9
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.9e-105 384.8 193 96.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.5e-104 382.9 193 95.3
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.9e-104 382.5 193 96.4
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 7.3e-104 380.6 193 95.3
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 7.3e-104 380.6 193 95.3
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 7.3e-104 380.6 193 95.3
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 4.9e-100 367.9 193 90.2
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.0e-97 358.6 193 89.1
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.1e-96 356.7 193 89.1
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 88.1
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 88.1
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 3.3e-96 355.1 199 89.4
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 4.3e-96 354.8 193 86.5
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 7.4e-96 354.0 193 86.0
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 9.6e-96 353.6 193 87.6
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.3e-95 353.2 193 88.1
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 86.0
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 3.7e-95 351.7 191 86.9
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 87.0
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 85.5
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 4.8e-95 351.3 193 86.0
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 4.8e-95 351.3 193 85.5
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 4.8e-95 351.3 192 86.5
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 85.0
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 86.0
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 85.0
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 85.5
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.4e-94 349.7 193 85.5
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 85.0
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 3.1e-94 348.6 190 85.8
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 85.5
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 85.0
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 85.0
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 5.3e-94 347.8 193 84.5
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 5.3e-94 347.8 193 83.9
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 6.9e-94 347.4 193 83.9
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 9.0e-94 347.1 194 86.1
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 2.0e-93 345.9 190 85.8
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 3.4e-93 345.1 190 84.7
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 84.5
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 85.8
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 85.3
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 85.3
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 1.3e-92 343.2 190 85.8
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 84.5
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 85.0
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 85.0
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 2.2e-92 342.4 194 84.0
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 2.9e-92 342.0 190 85.8
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 2.9e-92 342.0 193 82.9
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 82.9
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 6.4e-92 340.9 193 83.4
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 8.4e-92 340.5 193 82.9
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 8.4e-92 340.5 190 84.7
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.1e-91 340.1 193 84.5
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 2.5e-91 339.0 190 84.2
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 2.5e-91 339.0 190 84.2
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 5.5e-91 337.8 190 84.7
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 7.1e-91 337.4 193 81.9
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 9.3e-91 337.0 190 83.2
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 1.2e-90 336.7 190 83.7
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 82.6
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 6.0e-90 334.3 193 83.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 6.0e-90 334.3 193 83.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 7.9e-90 334.0 219 74.0
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 7.9e-90 334.0 193 80.8
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 1.3e-89 333.2 193 81.3
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 1.3e-89 333.2 193 81.9
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 82.4
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 82.4
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 3.0e-89 332.0 193 80.8
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 1.5e-88 329.7 197 80.7
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 3.3e-88 328.6 232 70.7
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.3e-87 326.6 182 85.2
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 2.1e-87 325.9 193 81.9
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 2.8e-87 325.5 190 81.1
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.8e-86 322.8 210 74.8
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 4.0e-86 321.6 247 67.2
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 1.2e-85 320.1 193 79.3
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.0e-84 317.0 193 80.8
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 2.9e-84 315.5 190 78.9
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 4.9e-84 314.7 197 80.7
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.4e-83 313.2 177 81.4
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 3.2e-83 312.0 177 81.9
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 6.1e-82 307.8 170 84.7
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 3.9e-81 305.1 164 86.6
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 7.4e-80 300.8 192 75.5
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 1.3e-79 300.1 164 82.3
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 2.2e-79 299.3 190 77.9
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 3.7e-79 298.5 194 75.8
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.4e-78 296.6 177 76.8
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 5.0e-76 288.1 190 70.5
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.5e-76 287.3 167 82.0
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 1.4e-75 286.6 159 84.9
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 9.1e-70 267.3 164 80.5
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 1.0e-68 263.8 159 79.9
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.5e-68 261.2 158 81.0
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 3.2e-67 258.8 139 88.5
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 7.9e-66 254.2 156 78.8
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.9e-65 251.9 134 88.8
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 3.7e-63 245.4 194 64.9
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 6.3e-63 244.6 170 68.2
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.1e-62 243.8 230 57.8
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 1.2e-58 230.3 170 63.5
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.6e-58 229.9 190 58.9
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 6.1e-58 228.0 112 96.4
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 9.7e-56 220.7 173 60.7
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 1.7e-55 219.9 133 80.5
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 4.8e-55 218.4 190 61.6
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.7e-52 209.9 178 55.6
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.0e-50 201.1 166 61.4
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 3.0e-49 199.1 166 59.6
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 4.2e-43 178.7 142 54.2
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 5.5e-43 178.3 131 66.4
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 2.8e-39 166.0 144 53.5
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 2.9e-36 156.0 106 66.0
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 2.4e-30 136.3 126 57.9
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.0e-29 133.3 167 46.1
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 5.9e-29 131.7 135 54.1
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.6e-26 122.5 135 53.3
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 4.4e-24 115.5 132 50.8
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-21 107.1 70 71.4
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.0e-20 102.8 219 37.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.1e-19 100.9 123 48.0
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.6e-19 98.6 135 45.2
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 6.8e-17 91.7 53 84.9
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 4.9e-15 85.5 50 84.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.9e-14 83.6 62 64.5
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 3.2e-14 82.8 57 66.7
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 1.7e-07 60.5 33 78.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.9e-07 59.7 102 37.3


User provided reference genes

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