Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 7.6e-73 276.9 128 100.0
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 7.8e-70 266.9 128 93.8
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 5.1e-69 264.2 127 92.9
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 5.1e-69 264.2 128 93.0
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 8.7e-69 263.5 128 93.0
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 4.3e-68 261.2 128 91.4
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 2.8e-67 258.5 128 90.6
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 3.6e-67 258.1 128 90.6
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 3.6e-67 258.1 128 90.6
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 9.9e-65 250.0 128 87.5
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 4.6e-62 241.1 128 85.9
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 3.0e-61 238.4 113 92.9
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 3.4e-57 224.9 125 80.8
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 5.8e-57 224.2 106 93.4
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 3.2e-55 218.4 108 87.0
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 7.1e-55 217.2 125 77.6
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 1.6e-54 216.1 125 75.2
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 2.7e-54 215.3 125 75.2
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 2.7e-54 215.3 125 76.0
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 2.7e-54 215.3 126 77.8
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 3.5e-54 214.9 125 76.8
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 4.6e-54 214.5 128 76.6
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 4.6e-54 214.5 127 74.8
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 7.9e-54 213.8 125 76.0
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 1.0e-53 213.4 125 76.0
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 3.0e-53 211.8 125 76.0
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 3.9e-53 211.5 124 76.6
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 1.1e-52 209.9 124 74.2
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 1.1e-52 209.9 125 73.6
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 1.5e-52 209.5 125 74.4
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 3.3e-52 208.4 125 74.4
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 5.7e-52 207.6 125 73.6
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 5.7e-52 207.6 125 73.6
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 7.4e-52 207.2 125 72.0
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 9.6e-52 206.8 125 74.4
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 9.6e-52 206.8 125 74.4
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 1.3e-51 206.5 125 73.6
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 1.6e-51 206.1 125 73.6
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 1.6e-51 206.1 125 72.0
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 2.1e-51 205.7 122 74.6
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 2.8e-51 205.3 122 76.2
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 3.7e-51 204.9 125 71.2
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 3.7e-51 204.9 125 72.0
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 3.7e-51 204.9 125 72.0
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 4.8e-51 204.5 125 74.4
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 6.2e-51 204.1 124 72.6
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 8.2e-51 203.8 125 72.8
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 1.1e-50 203.4 125 72.8
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 1.1e-50 203.4 125 70.4
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 1.4e-50 203.0 125 72.0
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 1.4e-50 203.0 122 72.1
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 1.8e-50 202.6 125 72.0
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 1.8e-50 202.6 122 73.8
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 1.8e-50 202.6 125 70.4
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 3.1e-50 201.8 118 73.7
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 3.1e-50 201.8 122 71.3
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 4.1e-50 201.4 122 72.1
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 6.9e-50 200.7 125 69.6
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 6.9e-50 200.7 125 70.4
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 9.0e-50 200.3 124 71.0
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 9.0e-50 200.3 124 73.4
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 9.0e-50 200.3 125 70.4
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 1.2e-49 199.9 125 71.2
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 1.2e-49 199.9 125 70.4
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 2.0e-49 199.1 125 69.6
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 3.4e-49 198.4 122 71.3
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 5.8e-49 197.6 125 70.4
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 7.6e-49 197.2 120 72.5
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 7.6e-49 197.2 121 71.1
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 7.6e-49 197.2 122 70.5
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 7.6e-49 197.2 122 70.5
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 1.0e-48 196.8 125 70.4
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 1.7e-48 196.1 125 70.4
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 3.8e-48 194.9 122 71.3
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 1.9e-47 192.6 111 74.8
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 2.5e-47 192.2 125 68.8
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 4.2e-47 191.4 125 66.4
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 5.5e-47 191.0 108 76.9
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 9.3e-47 190.3 110 75.5
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 1.3e-45 186.4 121 67.8
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 2.3e-45 185.7 116 67.2
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 2.3e-45 185.7 125 64.0
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 2.5e-44 182.2 143 60.8
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 1.3e-43 179.9 109 69.7
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 1.6e-43 179.5 122 63.1
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 2.2e-43 179.1 103 75.7
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 2.8e-43 178.7 120 63.3
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 4.1e-42 174.9 103 70.9
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 1.3e-40 169.9 97 73.2
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 2.9e-40 168.7 103 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 2.5e-39 165.6 122 61.5
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 3.2e-39 165.2 118 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 2.0e-36 156.0 122 59.0
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 3.3e-36 155.2 121 57.0
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 2.8e-35 152.1 97 63.9
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.2e-33 146.7 120 57.5
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 2.2e-32 142.5 88 70.5
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 5.0e-32 141.4 120 54.2
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 1.0e-29 133.7 121 48.8
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 2.8e-27 125.6 75 69.3
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 5.2e-21 104.8 112 41.1
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 8.8e-13 77.4 99 41.4
Solyc04g071630.3 Solanum lycopersicum HOM05D003340 ORTHO05D003775 3.7e-11 72.0 126 33.3
Nitab4.5_0001344g0050 Nicotiana tabacum HOM05D003340 ORTHO05D003775 8.3e-11 70.9 126 33.3
Sopen04g027620 Solanum pennellii HOM05D003340 ORTHO05D003775 1.1e-10 70.5 126 33.3
Nitab4.5_0001187g0040 Nicotiana tabacum HOM05D003340 ORTHO05D003775 3.1e-10 68.9 87 37.9
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 4.1e-10 68.6 128 32.0
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 5.4e-10 68.2 88 36.4
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 7.0e-10 67.8 85 36.5
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 9.1e-10 67.4 87 36.8
CAN.G264.5 Capsicum annuum HOM05D003340 ORTHO05D003775 1.2e-09 67.0 124 32.3
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.2e-09 67.0 87 37.9
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.2e-09 67.0 87 37.9
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.6e-09 66.6 83 36.1
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 1.6e-09 66.6 127 33.9
Nn5g28288 Nelumbo nucifera HOM05D003340 ORTHO05D003775 2.0e-09 66.2 87 36.8
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 2.7e-09 65.9 87 36.8
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 2.7e-09 65.9 87 34.5
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.7e-09 65.9 107 34.6
PGSC0003DMG400006659 Solanum tuberosum HOM05D003340 ORTHO05D003775 3.5e-09 65.5 124 31.5
Gohir.A01G189000 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.5e-09 65.1 126 31.0
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 4.5e-09 65.1 87 36.8
HPP92_018105 Vanilla planifolia HOM05D003340 ORTHO05D003775 4.5e-09 65.1 88 34.1
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 1.0e-08 63.9 87 35.6
SMO119G0032 Selaginella moellendorffii HOM05D003340 ORTHO05D003775 1.0e-08 63.9 84 33.3
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 1.3e-08 63.5 87 33.3
Gohir.D01G180500 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.7e-08 63.2 126 30.2
Gorai.002G222100 Gossypium raimondii HOM05D003340 ORTHO05D003775 1.7e-08 63.2 126 30.2
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 1.7e-08 63.2 87 34.5
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 2.9e-08 62.4 90 33.3
Duzib093G0952 Durio zibethinus HOM05D003340 ORTHO05D003775 2.9e-08 62.4 122 31.1
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 2.9e-08 62.4 123 30.9
Oeu059436.2 Olea europaea HOM05D003340 ORTHO05D003775 2.9e-08 62.4 87 35.6
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 3.8e-08 62.0 90 33.3
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 6.5e-08 61.2 87 35.6
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 6.5e-08 61.2 87 33.3
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 8.5e-08 60.8 86 33.7
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 8.5e-08 60.8 93 34.4
TAR636G0511 Trochodendron aralioides HOM05D003340 ORTHO05D003775 8.5e-08 60.8 93 34.4
Glyma.13G079000 Glycine max HOM05D003340 ORTHO05D003775 1.1e-07 60.5 127 30.7
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 1.1e-07 60.5 87 35.6
MBI11_g05791_MAGBIO Magnolia biondii HOM05D003340 ORTHO05D003775 1.5e-07 60.1 93 35.5
Mapoly0166s0008 Marchantia polymorpha HOM05D003340 ORTHO05D003775 1.5e-07 60.1 120 30.0
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 1.5e-07 60.1 126 29.4
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 1.5e-07 60.1 126 31.0
Atru.chr13.1461 Acer truncatum HOM05D003340 ORTHO05D003775 1.9e-07 59.7 87 35.6
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 1.9e-07 59.7 83 34.9
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.9e-07 59.7 87 35.6
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 1.9e-07 59.7 95 29.5
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 1.9e-07 59.7 126 31.0
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 1.9e-07 59.7 125 31.2
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 2.5e-07 59.3 128 31.2
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 2.5e-07 59.3 90 33.3
CSS0003781 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 3.2e-07 58.9 124 31.5
CSS0046765 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 3.2e-07 58.9 124 31.5
FAN15G0091 Fragaria x ananassa HOM05D003340 ORTHO05D003775 4.2e-07 58.5 88 34.1
Gohir.A06G044800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.2e-07 58.5 87 34.5
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 4.2e-07 58.5 87 34.5
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 4.2e-07 58.5 87 34.5
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 4.2e-07 58.5 84 33.3
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 5.5e-07 58.2 81 33.3
FAN20G1789 Fragaria x ananassa HOM05D003340 ORTHO05D003775 5.5e-07 58.2 88 34.1
COL.COLO4_36312 Corchorus olitorius HOM05D003340 ORTHO05D003775 7.2e-07 57.8 87 33.3
SGA_v2.0_scaffold120G33021 Striga asiatica HOM05D003340 ORTHO05D003775 7.2e-07 57.8 93 35.5
Gohir.D06G045300 Gossypium hirsutum HOM05D003340 ORTHO05D003775 9.4e-07 57.4 87 34.5
Gorai.010G050300 Gossypium raimondii HOM05D003340 ORTHO05D003775 9.4e-07 57.4 87 34.5
PGR044G1945 Punica granatum HOM05D003340 ORTHO05D003775 9.4e-07 57.4 86 34.9
Glyma.14G150300 Glycine max HOM05D003340 ORTHO05D003775 1.6e-06 56.6 86 33.7
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 1.6e-06 56.6 124 29.8
MD15G1348300 Malus domestica HOM05D003340 ORTHO05D003775 1.6e-06 56.6 88 33.0
Nn3g19971 Nelumbo nucifera HOM05D003340 ORTHO05D003775 1.6e-06 56.6 62 35.5
arahy.Tifrunner.gnm1.ann1.JPFK87 Arachis hypogaea HOM05D003340 ORTHO05D003775 2.1e-06 56.2 124 28.2
arahy.Tifrunner.gnm1.ann1.X0XLBA Arachis hypogaea HOM05D003340 ORTHO05D003775 2.1e-06 56.2 124 28.2
Hma1.2p1_0161F.1_g071770 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 2.1e-06 56.2 93 33.3
Lj4P627T24 Lonicera japonica HOM05D003340 ORTHO05D003775 2.1e-06 56.2 92 34.8
THA.LOC104817332 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 2.1e-06 56.2 124 28.2
Ciclev10002808m.g Citrus clementina HOM05D003340 ORTHO05D003775 2.7e-06 55.8 86 36.0
Cc10_g11880 Coffea canephora HOM05D003340 ORTHO05D003775 2.7e-06 55.8 91 30.8
Haze_00442 Corylus avellana HOM05D003340 ORTHO05D003775 4.7e-06 55.1 87 33.3
THA.LOC104808821 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 6.1e-06 54.7 91 36.3


User provided reference genes

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