Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.0e-194 681.8 371 100.0
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.2e-190 669.8 371 97.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.3e-186 656.4 371 94.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.3e-186 656.4 371 94.9
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-186 656.0 371 94.9
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.9e-186 654.8 370 95.7
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 8.6e-186 653.7 371 94.6
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.3e-185 650.6 371 94.1
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.3e-185 650.6 371 94.1
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-184 649.8 371 94.1
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.8e-184 648.7 371 93.8
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.6e-184 648.3 371 93.5
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 4.7e-184 647.9 371 94.3
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-183 646.4 371 93.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-183 645.6 371 93.5
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 3.1e-183 645.2 373 94.4
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.1e-183 645.2 371 93.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 4.9e-181 637.9 369 94.9
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-180 636.7 372 94.1
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-180 636.7 372 94.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 7.1e-180 634.0 371 92.5
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-179 631.7 371 93.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 5.1e-178 627.9 369 92.7
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.5e-169 599.7 369 88.1
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.4e-158 562.0 371 83.0
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-147 526.6 296 94.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 3.9e-138 495.4 367 74.9
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 7.4e-137 491.1 317 88.0
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 6.3e-136 488.0 373 75.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.4e-135 486.9 366 73.8
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 6.9e-135 484.6 369 73.2
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.2e-134 483.8 365 75.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.2e-134 483.8 371 72.8
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.6e-134 482.6 365 73.2
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 7.7e-134 481.1 367 74.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-133 480.3 365 74.8
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.0e-133 478.4 358 75.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 6.5e-133 478.0 365 75.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-132 477.2 344 77.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 358 75.1
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 368 72.6
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 2.5e-132 476.1 374 73.0
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 9.4e-132 474.2 371 72.0
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.2e-131 473.8 371 72.2
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.1e-131 473.0 381 72.2
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 2.1e-131 473.0 371 72.0
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.7e-131 472.6 372 70.2
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.6e-131 472.2 366 73.5
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.4e-130 470.3 344 77.0
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.8e-130 469.9 365 73.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.8e-130 469.9 373 71.8
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 5.1e-130 468.4 377 69.2
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 1.1e-129 467.2 369 72.1
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.1e-129 467.2 375 69.3
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.5e-129 466.8 373 71.8
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 4.4e-129 465.3 374 70.1
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 7.4e-129 464.5 334 75.4
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.7e-128 462.2 373 72.7
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.7e-128 462.2 376 68.6
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 4.8e-128 461.8 372 69.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.8e-128 461.8 335 76.7
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 4.8e-128 461.8 364 71.7
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 4.8e-128 461.8 370 71.1
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 4.8e-128 461.8 355 71.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 8.2e-128 461.1 374 70.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.4e-127 460.3 325 75.4
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.4e-127 459.5 375 71.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 7.0e-127 458.0 326 76.1
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 9.1e-127 457.6 327 76.8
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 2.0e-126 456.4 334 75.7
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 5.9e-126 454.9 378 69.3
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 7.7e-126 454.5 342 73.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.7e-125 453.4 367 68.4
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.2e-125 453.0 358 71.8
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 3.8e-125 452.2 326 75.2
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 5.0e-125 451.8 352 74.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 8.5e-125 451.1 322 75.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.5e-124 450.3 323 77.1
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.5e-124 449.5 373 69.2
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.5e-124 449.5 357 69.7
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.2e-124 449.1 348 74.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 3.2e-124 449.1 292 84.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 7.2e-124 448.0 330 74.8
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 7.2e-124 448.0 347 73.2
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.2e-123 447.2 344 74.7
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.7e-123 446.0 375 67.5
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.7e-123 446.0 370 69.5
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 2.7e-123 446.0 322 75.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 3.6e-123 445.7 362 69.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 3.6e-123 445.7 326 74.2
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 4.7e-123 445.3 379 67.8
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 8.0e-123 444.5 339 72.3
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 8.0e-123 444.5 341 72.4
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 8.0e-123 444.5 338 72.5
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.0e-122 444.1 381 67.7
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.0e-122 444.1 362 69.3
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.3e-122 443.0 331 72.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.3e-122 443.0 351 70.7
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.3e-122 443.0 352 69.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.2e-122 441.8 370 66.8
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.7e-122 441.4 366 68.0
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.7e-122 441.4 345 71.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 6.7e-122 441.4 371 67.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.5e-121 440.3 322 74.2
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 5.7e-121 438.3 366 67.5
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.5e-121 438.0 366 67.5
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 7.5e-121 438.0 349 65.9
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 7.5e-121 438.0 371 66.0
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 7.5e-121 438.0 353 71.7
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 9.7e-121 437.6 321 75.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 1.3e-120 437.2 329 73.3
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.2e-120 434.5 377 67.6
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.3e-119 431.8 373 66.2
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 5.9e-118 428.3 370 66.2
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 4.7e-115 418.7 371 66.6
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 2.3e-114 416.4 331 70.7
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 5.2e-114 415.2 367 64.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.1e-111 406.0 323 69.7
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.0e-110 403.3 369 63.7
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 3.0e-106 389.4 243 89.3
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 5.2e-106 388.7 377 59.4
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 7.5e-105 384.8 368 63.0
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.3e-104 381.3 329 64.4
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.1e-103 379.4 359 60.7
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.0e-101 374.4 326 63.5
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.4e-95 354.0 345 59.1
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 5.4e-95 352.1 247 80.2
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.7e-94 349.7 330 60.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.7e-85 320.5 335 57.0
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.0e-85 319.7 297 58.6
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.3e-82 310.1 206 76.7
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.7e-80 303.9 337 53.4
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.7e-77 293.9 330 54.5
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.1e-75 287.0 324 55.2
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-71 274.2 242 60.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.9e-55 220.7 208 60.1
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 8.7e-53 211.8 261 49.0
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 3.9e-45 186.4 143 65.0
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.3e-44 183.0 165 60.0
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.0e-41 174.1 130 71.5
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.3e-35 154.8 164 58.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.1e-31 141.7 103 71.8
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-30 136.3 78 91.0
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.5e-28 131.3 89 71.9
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 4.8e-27 126.3 95 70.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 6.3e-27 125.9 68 91.2
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.3e-24 118.2 110 54.5
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.8e-24 116.7 128 50.8
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 9.4e-23 112.1 95 63.2
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-22 110.9 66 87.9
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.7e-20 102.8 125 49.6
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 9.7e-20 102.1 79 64.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 5.3e-18 96.3 87 58.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.7e-16 91.3 284 31.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 8.5e-16 89.0 310 29.7
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 2.5e-15 87.4 312 31.1
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.7e-14 84.0 63 73.0
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 9.7e-12 75.5 69 65.2
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 2.8e-11 73.9 73 61.6
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.8e-10 71.2 49 67.3
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.1e-10 70.5 49 69.4
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.3e-10 69.7 59 61.0
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 7.0e-10 69.3 177 35.0
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.0e-09 67.8 50 66.0
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-09 67.0 51 60.8
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.9e-09 66.2 67 50.7
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-08 65.5 43 76.7
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-08 65.1 49 65.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.7e-08 64.7 44 70.5
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.8e-08 63.5 50 62.0
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.5e-07 59.7 49 59.2
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.7e-06 56.6 80 50.0
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.7e-06 56.6 80 50.0
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 6.1e-06 56.2 67 68.7


User provided reference genes

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