Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 4.7e-64 248.1 158 100.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.6e-51 206.5 158 89.9
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.7e-42 176.4 158 80.4
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.9e-42 175.6 128 82.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.5e-41 173.3 128 81.2
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.2e-41 171.8 158 81.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.2e-41 171.8 128 80.5
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.2e-41 171.8 128 80.5
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.2e-41 171.8 128 80.5
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 5.5e-41 171.4 127 81.1
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-39 167.2 127 76.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.0e-39 167.2 127 76.4
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.8e-39 164.5 158 79.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.4e-36 156.8 158 78.5
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.9e-34 149.1 114 73.7
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 4.3e-33 145.2 99 80.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 3.6e-32 142.1 99 79.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 3.6e-32 142.1 99 79.8
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.3e-25 119.0 133 57.9
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.7e-24 115.2 124 59.7
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 6.8e-23 111.3 60 85.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-22 110.2 127 54.3
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 5.8e-22 108.2 117 53.8
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 9.8e-22 107.5 61 78.7
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.7e-21 106.7 66 74.2
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.4e-20 103.6 106 62.3
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.4e-20 103.6 56 85.7
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.6e-19 100.1 127 49.6
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.0e-19 99.8 52 88.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.0e-19 99.8 54 83.3
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 3.5e-19 99.0 89 61.8
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 6.0e-19 98.2 103 58.3
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 6.0e-19 98.2 50 88.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 7.8e-19 97.8 130 53.1
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.3e-18 97.1 127 51.2
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 8.6e-18 94.4 133 50.4
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.6e-18 94.4 127 50.4
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 8.6e-18 94.4 58 77.6
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.1e-17 94.0 53 79.2
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-17 92.8 126 48.4
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.5e-17 92.8 107 53.3
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.3e-17 92.0 127 49.6
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.3e-17 92.0 127 49.6
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 5.6e-17 91.7 95 57.9
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 9.5e-17 90.9 69 68.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.6e-16 90.1 115 52.2
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.8e-16 89.4 51 86.3
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.8e-16 89.4 60 73.3
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 4.7e-16 88.6 87 60.9
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.7e-16 88.6 43 93.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 6.2e-16 88.2 108 51.9
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 6.2e-16 88.2 54 75.9
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 8.1e-16 87.8 46 89.1
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.4e-15 87.0 140 47.9
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.4e-15 87.0 53 79.2
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.4e-15 87.0 53 79.2
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.4e-15 87.0 113 49.6
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.8e-15 86.7 121 51.2
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.8e-15 86.7 127 46.5
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 2.3e-15 86.3 127 46.5
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.3e-15 86.3 103 58.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 3.1e-15 85.9 101 52.5
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 3.1e-15 85.9 136 50.0
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.0e-15 85.5 50 82.0
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.2e-14 84.0 56 71.4
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.5e-14 83.6 54 75.9
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-14 83.6 54 75.9
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.5e-14 83.6 69 59.4
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-14 83.2 109 50.5
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.0e-14 83.2 109 50.5
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.6e-14 82.8 128 49.2
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 5.8e-14 81.6 127 44.9
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 7.5e-14 81.3 53 75.5
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 9.8e-14 80.9 68 63.2
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.3e-13 80.5 113 51.3
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.2e-13 79.7 40 85.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 2.2e-13 79.7 65 66.2
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.2e-13 79.7 54 72.2
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.2e-13 79.7 46 80.4
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.2e-13 79.7 73 57.5
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 2.9e-13 79.3 129 48.1
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.9e-13 79.3 45 77.8
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.9e-13 79.3 88 52.3
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.7e-13 79.0 42 81.0
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.7e-13 79.0 50 76.0
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 4.9e-13 78.6 39 87.2
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 4.9e-13 78.6 39 92.3
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 6.4e-13 78.2 47 78.7
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.4e-13 78.2 88 53.4
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-12 77.4 87 52.9
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.1e-12 77.4 113 48.7
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.9e-12 76.6 127 44.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.9e-12 76.6 93 49.5
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.9e-12 76.6 115 46.1
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.9e-12 76.6 117 46.2
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 52 71.2
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.1e-12 75.5 37 89.2
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 4.1e-12 75.5 113 45.1
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 5.4e-12 75.1 50 72.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 7.1e-12 74.7 115 44.3
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 7.1e-12 74.7 47 74.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.2e-11 73.9 110 50.9
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.2e-11 73.9 37 86.5
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.2e-11 73.9 38 84.2
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.6e-11 73.6 88 53.4
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.6e-11 73.6 57 68.4
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.7e-11 72.8 46 73.9
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 2.7e-11 72.8 35 91.4
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.7e-11 72.8 36 88.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.5e-11 72.4 37 83.8
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 6.0e-11 71.6 53 69.8
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 6.0e-11 71.6 53 69.8
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 7.8e-11 71.2 43 79.1
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 7.8e-11 71.2 78 55.1
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.0e-10 70.9 65 63.1
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 1.0e-10 70.9 36 80.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.7e-10 70.1 102 48.0
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.7e-10 70.1 36 80.6
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.7e-10 70.1 117 48.7
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 3.0e-10 69.3 131 41.2
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 3.0e-10 69.3 105 44.8
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 3.9e-10 68.9 84 51.2
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 8.6e-10 67.8 35 80.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.5e-09 67.0 88 46.6
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.9e-09 66.6 130 36.9
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.9e-09 66.6 80 55.0
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.2e-08 63.9 142 42.3
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.4e-07 60.5 113 42.5
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 2.6e-06 56.2 42 66.7


User provided reference genes

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