Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 9.1e-134 481.9 751 100.0
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 9.2e-110 402.1 748 94.5
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 3.5e-109 400.2 748 94.4
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.0e-108 398.7 748 94.1
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 1.0e-108 398.7 748 94.0
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.3e-108 397.5 748 93.9
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.2e-104 385.2 749 93.3
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.6e-101 374.8 748 92.9
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 3.9e-100 370.2 749 92.9
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 5.6e-99 366.3 748 91.3
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 2.3e-97 360.9 748 92.1
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.6e-96 357.5 749 91.5
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.2e-94 350.5 748 90.2
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 6.4e-79 299.7 748 82.9
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 3.2e-46 191.0 742 80.3
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.8e-44 185.3 740 80.5
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 1.5e-43 182.2 742 79.0
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.5e-43 182.2 742 71.6
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 2.5e-43 181.4 744 76.7
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 9.7e-43 179.5 736 73.5
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.2e-42 178.3 736 76.6
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.2e-42 178.3 736 76.6
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.1e-41 174.1 736 76.2
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 3.4e-40 171.0 736 75.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.3e-39 169.1 742 79.6
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.2e-39 168.3 738 74.4
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.9e-39 167.9 736 75.3
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 6.5e-39 166.8 739 78.3
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 1.9e-38 165.2 743 72.9
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 6.1e-37 160.2 744 73.4
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 7.9e-37 159.8 744 78.9
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 8.8e-36 156.4 748 74.3
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 1.5e-35 155.6 745 74.9
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.4e-35 154.1 736 78.8
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.3e-34 152.5 745 66.0
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 1.7e-34 152.1 745 77.7
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 3.7e-34 151.0 736 78.7
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 6.3e-34 150.2 744 74.9
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 9.1e-33 146.4 743 73.9
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 2.0e-32 145.2 151 50.3
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 4.5e-32 144.1 738 78.0
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.2e-31 141.7 147 49.0
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.1e-30 139.4 149 51.0
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.4e-30 139.0 746 70.4
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 6.1e-29 133.7 745 69.3
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.0e-28 132.9 151 45.7
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 5.2e-28 130.6 152 47.4
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.1e-27 129.4 144 47.9
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.5e-27 129.0 744 75.0
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.5e-27 129.0 143 48.3
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 2.0e-27 128.6 742 76.5
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.6e-27 128.3 152 43.4
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 5.7e-27 127.1 148 43.2
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 9.7e-27 126.3 158 41.1
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.8e-26 124.8 143 43.4
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.1e-25 122.9 143 42.0
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 1.4e-25 122.5 152 42.8
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.1e-25 121.3 150 40.7
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 3.1e-25 121.3 150 42.7
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 3.1e-25 121.3 149 42.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.2e-24 119.4 152 42.8
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.0e-24 118.6 149 43.6
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.0e-24 118.6 149 43.6
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.6e-24 118.2 144 43.8
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 2.6e-24 118.2 148 42.6
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 5.9e-24 117.1 150 42.0
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.7e-23 115.5 144 41.0
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 2.2e-23 115.2 149 40.3
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 3.8e-23 114.4 150 41.3
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 5.0e-23 114.0 151 39.1
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.1e-22 112.8 151 41.1
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 3.2e-22 111.3 149 38.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 4.2e-22 110.9 151 42.4
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 4.2e-22 110.9 151 37.1
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 9.4e-22 109.8 149 38.9
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 4.7e-21 107.5 132 43.2
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 6.1e-21 107.1 149 39.6
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 6.1e-21 107.1 249 75.1
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.0e-20 106.3 149 39.6
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.0e-20 106.3 152 40.8
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 3.0e-20 104.8 145 40.0
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 2.6e-19 101.7 149 40.9
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.2e-18 98.6 144 38.2
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 3.7e-18 97.8 150 36.0
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 9.1e-17 93.2 250 67.2
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.6e-16 92.4 246 73.2
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 4.5e-16 90.9 63 65.1
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.7e-15 89.0 246 54.5
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.2e-15 88.6 246 72.8
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 3.8e-15 87.8 156 33.3
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.2e-13 82.8 247 70.4
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.1e-13 82.0 246 71.5
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 3.6e-13 81.3 94 41.5
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.4e-12 79.3 93 40.9
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 8.8e-12 76.6 85 45.9
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.0e-11 75.5 238 71.8
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.0e-11 75.5 68 55.9
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 9.8e-11 73.2 237 73.0
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 9.8e-11 73.2 65 55.4
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.7e-10 72.4 56 60.7
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.1e-09 69.7 62 54.8
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 3.1e-09 68.2 238 72.3
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 5.0e-07 60.8 64 45.3


User provided reference genes

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