Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.1e-267 926.0 470 100.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.5e-190 669.8 481 75.9
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 4.9e-186 654.8 479 74.1
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 4.2e-185 651.7 476 74.2
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.5e-184 648.7 490 74.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.9e-182 642.9 487 74.1
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-169 600.5 470 71.9
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.1e-169 600.5 470 71.9
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.8e-167 593.2 470 71.1
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.8e-167 593.2 470 71.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.6e-165 586.6 470 70.6
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-160 570.1 478 70.3
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-155 553.1 485 68.5
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.0e-155 553.1 485 68.5
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.0e-155 553.1 485 68.5
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 8.8e-151 537.7 463 68.5
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 3.3e-150 535.8 465 68.6
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 2.0e-134 483.4 503 58.3
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 6.6e-82 308.9 210 78.6
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.1e-81 308.1 538 41.8
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.4e-71 274.6 539 40.3
CARHR106560 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.1e-63 248.4 263 60.5
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 8.4e-53 212.2 143 76.2
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.9e-44 184.5 316 44.3
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 6.1e-43 179.5 241 49.8
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-40 171.8 307 43.0
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 1.3e-40 171.8 307 43.0
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 1.6e-40 171.4 156 66.7
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 3.1e-39 167.2 394 35.3
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.5e-38 164.9 394 35.0
C04p04170 Brassica napus HOM05D008776 ORTHO05D005587 2.0e-38 164.5 136 69.9
BolC4t22056H Brassica oleracea HOM05D008776 ORTHO05D005587 2.0e-38 164.5 136 69.9
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 7.7e-38 162.5 383 35.8
C05p54830 Brassica napus HOM05D008776 ORTHO05D005587 1.0e-37 162.2 136 69.1
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.0e-37 162.2 355 36.9
BolC5t29828H Brassica oleracea HOM05D008776 ORTHO05D005587 1.7e-37 161.4 136 69.1
C01p32810 Brassica napus HOM05D008776 ORTHO05D005587 3.8e-37 160.2 152 65.1
BcaC05g29210 Brassica carinata HOM05D008776 ORTHO05D005587 5.0e-37 159.8 146 65.1
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 6.5e-37 159.5 393 34.6
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 9.4e-36 155.6 370 36.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.0e-34 152.1 384 32.8
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 5.1e-34 149.8 307 41.4
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 8.8e-34 149.1 403 31.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.5e-33 148.3 399 34.1
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.3e-32 145.2 358 35.5
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.7e-32 143.7 354 35.0
BcaC09g49800 Brassica carinata HOM05D008776 ORTHO05D005587 8.2e-32 142.5 146 62.3
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.8e-31 141.4 358 34.4
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.8e-31 141.4 353 33.4
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.1e-31 140.6 389 31.6
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 6.9e-31 139.4 389 31.6
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 6.9e-31 139.4 358 34.1
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.2e-30 138.7 365 33.4
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 2.0e-30 137.9 397 32.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 5.9e-30 136.3 377 34.7
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.2e-29 134.4 352 34.4
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 3.8e-29 133.7 362 33.7
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 5.0e-29 133.3 414 33.1
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 4.2e-28 130.2 394 33.0
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 5.5e-28 129.8 393 31.6
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 9.4e-28 129.0 362 33.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 2.7e-27 127.5 364 32.4
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.0e-26 125.6 344 31.4
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.0e-26 125.6 359 31.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.3e-26 124.4 360 31.4
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 3.0e-26 124.0 350 32.3
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 3.0e-26 124.0 390 31.8
AL7G16670 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 3.9e-26 123.6 149 54.4
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.9e-26 123.6 509 29.7
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.9e-26 123.6 396 32.3
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 6.7e-26 122.9 363 33.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 6.7e-26 122.9 358 32.7
C09p31770 Brassica napus HOM05D008776 ORTHO05D042895 1.1e-25 122.1 141 49.6
BolC9t56034H Brassica oleracea HOM05D008776 ORTHO05D042895 1.1e-25 122.1 141 49.6
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.5e-25 121.7 387 30.5
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.0e-25 121.3 379 32.5
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 2.0e-25 121.3 361 32.1
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 4.4e-25 120.2 385 30.1
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 7.4e-25 119.4 354 33.1
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.3e-24 118.6 386 30.3
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-24 117.1 379 32.5
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 6.3e-24 116.3 388 31.7
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 6.3e-24 116.3 391 29.9
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 8.2e-24 115.9 363 29.8
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.1e-23 115.5 346 33.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.4e-23 115.2 374 32.4
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.8e-23 114.8 382 29.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 7.0e-23 112.8 412 29.1
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.2e-22 112.1 364 31.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.7e-22 109.4 396 28.3
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.0e-21 109.0 349 28.1
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.7e-21 108.2 322 28.9
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.8e-21 107.1 361 32.7
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 8.5e-21 105.9 306 31.0
CARHR242860 Cardamine hirsuta HOM05D008776 ORTHO05D005587 4.2e-20 103.6 154 46.1
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 5.5e-20 103.2 362 29.6
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 7.2e-20 102.8 304 29.9
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 7.2e-20 102.8 324 32.4
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 9.4e-20 102.4 363 30.9
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.2e-19 102.1 362 30.9
BolC1t03218H Brassica oleracea HOM05D008776 ORTHO05D005587 2.1e-19 101.3 91 67.0
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 4.7e-19 100.1 393 28.2
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 6.1e-19 99.8 346 29.8
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 6.1e-19 99.8 401 27.9
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 4.0e-18 97.1 351 28.5
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 2.6e-17 94.4 399 27.1
BcaC01g00896 Brassica carinata HOM05D008776 ORTHO05D005587 5.7e-17 93.2 196 39.8
C03p85680 Brassica napus HOM05D008776 ORTHO05D005587 7.4e-17 92.8 182 40.7
BolC3t20854H Brassica oleracea HOM05D008776 ORTHO05D005587 7.4e-17 92.8 182 40.7
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.3e-16 92.0 403 27.0
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.7e-16 91.7 384 29.2
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 3.7e-16 90.5 324 30.2
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 6.3e-16 89.7 390 26.7
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.1e-15 89.0 347 28.8
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 3.1e-15 87.4 289 32.5
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.2e-14 85.5 225 32.9
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.6e-14 85.1 334 28.4
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.5e-14 84.0 334 29.6
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.3e-13 82.0 328 29.9
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.7e-13 81.6 288 29.2
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.7e-13 81.6 344 27.9
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.9e-13 80.9 355 27.3
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.8e-13 80.5 319 27.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 1.9e-12 78.2 318 26.4
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.9e-12 78.2 295 28.1
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.9e-12 78.2 364 29.1
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.2e-11 75.5 386 25.6
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.6e-11 75.1 191 34.6
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.1e-11 73.2 340 26.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 4.0e-10 70.5 332 27.7
BcaC01g00895 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-09 68.2 66 56.1
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.0e-09 68.2 228 28.5
BcaC01g00894 Brassica carinata HOM05D000394 ORTHO05D000299 2.6e-09 67.8 86 45.3
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.6e-09 67.8 339 25.7
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 4.4e-09 67.0 234 31.6
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 7.5e-09 66.2 219 29.2
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.8e-09 65.9 311 28.0
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.8e-08 64.3 309 26.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.1e-07 62.4 252 27.0
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 1.8e-07 61.6 307 26.1
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 4.1e-07 60.5 241 29.0
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-06 58.9 96 37.5
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.6e-06 58.5 134 32.8
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 5.9e-06 56.6 363 26.2


User provided reference genes

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