Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.4e-168 596.3 314 100.0
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.4e-139 500.0 315 83.2
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 5.1e-139 498.0 316 84.2
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 7.7e-135 484.2 319 82.4
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 7.7e-135 484.2 319 82.4
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 7.7e-135 484.2 319 82.4
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 2.3e-131 472.6 314 81.5
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.4e-128 463.4 316 82.3
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 2.0e-127 459.5 316 79.7
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 2.0e-127 459.5 316 79.7
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 7.2e-125 451.1 321 79.1
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 8.8e-123 444.1 319 78.1
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 8.8e-123 444.1 319 78.1
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 2.0e-119 433.0 316 74.4
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 2.2e-118 429.5 320 75.6
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.5e-117 426.0 319 75.2
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.4e-107 393.7 319 72.4
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 4.4e-106 388.7 314 73.2
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.6e-102 374.8 319 68.0
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 4.4e-90 335.5 316 61.7
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 9.2e-80 301.2 314 63.1
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 9.2e-80 301.2 314 63.1
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 2.9e-73 279.6 331 51.7
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 3.0e-70 269.6 222 71.6
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 9.6e-69 264.6 330 49.7
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 6.8e-67 258.5 313 48.9
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 8.9e-67 258.1 323 46.7
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.2e-66 257.7 322 45.7
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 3.4e-66 256.1 322 47.5
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.3e-65 254.2 315 48.6
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 2.2e-65 253.4 315 48.3
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.9e-64 250.4 330 49.7
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 7.1e-64 248.4 315 47.9
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 4.6e-63 245.7 324 48.5
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 4.6e-63 245.7 343 45.2
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 7.8e-63 245.0 321 46.1
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.0e-62 244.6 312 46.5
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.3e-62 244.2 317 46.4
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.3e-62 243.4 320 45.6
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 5.1e-62 242.3 317 45.7
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.1e-61 241.1 312 46.2
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.1e-60 236.9 328 46.0
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.8e-60 236.5 318 45.0
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 8.1e-60 235.0 325 46.2
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.1e-59 234.6 312 44.6
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 1.4e-59 234.2 161 83.2
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.8e-59 233.8 323 45.8
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.8e-59 233.8 319 43.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 3.1e-59 233.0 365 40.3
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 4.0e-59 232.6 278 50.4
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 6.9e-59 231.9 317 45.4
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 9.0e-59 231.5 325 45.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 2.6e-58 229.9 329 44.4
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 3.4e-58 229.6 358 42.5
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 1.3e-57 227.6 326 44.8
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 2.2e-57 226.9 322 44.1
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 2.9e-57 226.5 321 45.8
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 4.9e-57 225.7 318 44.7
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 1.4e-56 224.2 326 42.6
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 1.4e-56 224.2 315 43.8
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.4e-56 223.4 314 43.9
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 2.4e-56 223.4 320 44.7
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 3.2e-56 223.0 327 45.6
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 9.3e-56 221.5 309 47.2
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.2e-55 221.1 312 45.2
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.2e-55 221.1 314 43.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.2e-55 221.1 358 40.8
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.5e-55 219.5 321 44.5
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 6.0e-55 218.8 315 42.9
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.7e-54 217.2 321 41.7
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 2.3e-54 216.9 327 42.8
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 2.3e-54 216.9 327 43.4
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 2.3e-54 216.9 323 41.8
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 3.0e-54 216.5 315 43.2
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.1e-54 215.7 315 44.4
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 6.6e-54 215.3 329 45.0
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 1.9e-53 213.8 316 45.6
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 4.3e-53 212.6 312 43.6
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 5.6e-53 212.2 320 43.1
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 7.4e-53 211.8 321 44.2
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 9.6e-53 211.5 320 44.1
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.3e-52 211.1 322 43.5
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.3e-52 211.1 317 38.8
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.1e-52 210.3 316 41.8
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.1e-52 210.3 314 42.0
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 4.8e-52 209.1 328 43.6
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 8.1e-52 208.4 315 41.9
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.1e-51 206.5 321 40.8
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 3.1e-51 206.5 325 41.8
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 6.9e-51 205.3 333 40.2
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.0e-50 203.8 304 42.4
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 5.8e-50 202.2 326 39.9
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.7e-49 200.7 318 40.3
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 1.7e-49 200.7 317 42.9
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 2.9e-49 199.9 317 39.4
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 8.4e-49 198.4 316 40.5
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 1.1e-48 198.0 322 42.5
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.1e-48 198.0 317 42.6
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.4e-48 197.6 321 42.7
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.4e-48 197.6 313 43.1
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 1.9e-48 197.2 314 40.8
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.9e-48 197.2 319 40.1
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.4e-48 196.8 227 46.7
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 2.4e-48 196.8 307 43.6
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.2e-48 196.4 312 41.0
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 4.2e-48 196.1 243 47.7
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 5.5e-48 195.7 315 40.0
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 7.1e-48 195.3 320 38.8
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 7.1e-48 195.3 247 45.3
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 1.2e-47 194.5 218 49.5
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 2.1e-47 193.7 320 40.0
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.7e-47 193.4 318 39.3
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 2.7e-47 193.4 315 40.0
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 3.5e-47 193.0 312 39.7
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 6.0e-47 192.2 313 39.0
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 7.9e-47 191.8 225 46.7
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 7.9e-47 191.8 314 39.5
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.3e-46 191.0 315 39.7
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.5e-45 187.6 220 45.9
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.9e-45 187.2 214 52.3
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.8e-43 180.6 231 46.8
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.8e-43 180.6 318 38.4
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 3.1e-43 179.9 322 37.9
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 5.3e-43 179.1 324 38.0
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 5.3e-43 179.1 321 38.3
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 4.5e-42 176.0 320 37.5
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 2.9e-41 173.3 167 62.3
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 3.8e-41 172.9 288 42.0
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.9e-40 170.6 315 39.0
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 5.5e-40 169.1 313 36.4
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 1.3e-38 164.5 386 33.2
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.8e-36 156.8 338 35.2
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 1.4e-35 154.5 340 35.0
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 8.7e-30 135.2 179 45.3
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 5.7e-29 132.5 315 31.1
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.2e-28 130.6 172 45.9
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 4.1e-27 126.3 284 32.4
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 9.0e-27 125.2 363 32.5
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-24 118.2 361 31.3
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.1e-23 114.0 389 29.3
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 2.3e-22 110.5 337 30.9
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.4e-21 105.5 350 30.9
BcaB07g31779 Brassica carinata HOM05D001401 ORTHO05D006368 9.7e-21 105.1 97 66.0
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 3.7e-20 103.2 87 69.0
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.3e-20 102.4 363 32.5
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.2e-15 88.2 389 26.7
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.1e-15 87.4 86 52.3
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 1.4e-14 84.7 128 43.8
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.4e-14 84.7 161 40.4
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 9.7e-13 78.6 276 30.8
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.8e-11 74.3 115 36.5
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 3.1e-11 73.6 210 33.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.6e-10 70.5 347 25.6
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.8e-09 66.6 105 37.1
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.2e-08 63.2 95 36.8
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 7.2e-08 62.4 57 59.6
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.1e-07 60.8 155 30.3
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.6e-07 60.1 55 54.5
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.8e-06 57.8 171 32.2
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 2.3e-06 57.4 72 40.3
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 4.0e-06 56.6 101 36.6
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 5.2e-06 56.2 98 40.8
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 5.2e-06 56.2 172 32.0
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 5.2e-06 56.2 256 25.4
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 6.7e-06 55.8 177 32.2


User provided reference genes

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