Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 5.2e-43 177.2 82 100.0
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 7.6e-42 173.3 82 97.6
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 1.3e-41 172.6 82 97.6
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 2.9e-41 171.4 82 97.6
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 2.9e-41 171.4 82 97.6
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 2.9e-41 171.4 82 96.3
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 3.8e-41 171.0 81 97.5
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 6.4e-41 170.2 80 96.2
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 2.4e-40 168.3 80 95.0
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.6e-39 165.6 79 94.9
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 1.6e-39 165.6 82 95.1
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.1e-39 165.2 82 91.5
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.7e-39 164.9 82 91.5
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.3e-38 162.5 78 93.6
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 1.7e-38 162.2 82 93.9
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 1.7e-38 162.2 80 95.0
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 1.7e-38 162.2 80 95.0
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 1.7e-38 162.2 80 93.8
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 3.0e-38 161.4 82 90.2
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 8.7e-38 159.8 80 92.5
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 9.6e-37 156.4 74 97.3
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 3.1e-35 151.4 82 81.7
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.2e-34 149.4 82 81.7
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 2.6e-34 148.3 82 82.9
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 3.4e-34 147.9 82 81.7
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 3.4e-34 147.9 87 81.6
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 3.4e-34 147.9 82 80.5
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 3.4e-34 147.9 82 82.9
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 5.8e-34 147.1 83 80.7
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 7.6e-34 146.7 83 80.7
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 9.9e-34 146.4 83 81.9
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 9.9e-34 146.4 83 80.7
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 9.9e-34 146.4 82 79.3
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 9.9e-34 146.4 82 79.3
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.3e-33 146.0 86 80.2
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 1.3e-33 146.0 82 80.5
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 1.3e-33 146.0 83 80.7
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.7e-33 145.6 83 80.7
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.7e-33 145.6 84 82.1
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.7e-33 145.6 84 82.1
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 2.9e-33 144.8 82 78.0
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 4.9e-33 144.1 85 77.6
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 4.9e-33 144.1 84 79.8
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 4.9e-33 144.1 87 75.9
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 6.4e-33 143.7 82 79.3
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 6.4e-33 143.7 82 79.3
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 6.4e-33 143.7 85 77.6
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 6.4e-33 143.7 84 79.8
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 8.4e-33 143.3 87 75.9
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 8.4e-33 143.3 84 79.8
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 8.4e-33 143.3 83 79.5
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 8.4e-33 143.3 83 79.5
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 8.4e-33 143.3 84 78.6
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 8.4e-33 143.3 83 78.3
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 1.1e-32 142.9 82 75.6
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.1e-32 142.9 83 80.7
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 1.1e-32 142.9 87 77.0
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 1.4e-32 142.5 82 76.8
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 1.4e-32 142.5 84 78.6
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 1.4e-32 142.5 86 75.6
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.9e-32 142.1 84 79.8
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 1.9e-32 142.1 87 74.7
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.9e-32 142.1 84 81.0
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 2.4e-32 141.7 86 76.7
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 2.4e-32 141.7 87 77.0
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 3.2e-32 141.4 83 78.3
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 3.2e-32 141.4 87 74.7
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 3.2e-32 141.4 84 77.4
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 3.2e-32 141.4 83 78.3
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 4.2e-32 141.0 86 75.6
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 4.2e-32 141.0 83 75.9
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 4.2e-32 141.0 86 76.7
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 4.2e-32 141.0 86 75.6
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 4.2e-32 141.0 82 74.4
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 4.2e-32 141.0 79 79.7
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 4.2e-32 141.0 83 80.7
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.4e-32 140.6 83 74.7
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 5.4e-32 140.6 83 74.7
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 5.4e-32 140.6 86 76.7
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 5.4e-32 140.6 75 82.7
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 5.4e-32 140.6 87 72.4
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 5.4e-32 140.6 86 75.6
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 7.1e-32 140.2 84 78.6
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 7.1e-32 140.2 81 77.8
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 7.1e-32 140.2 84 75.0
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 9.3e-32 139.8 85 76.5
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 9.3e-32 139.8 80 77.5
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 9.3e-32 139.8 83 74.7
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 9.3e-32 139.8 82 75.6
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 1.2e-31 139.4 82 79.3
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 1.6e-31 139.0 86 74.4
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 1.6e-31 139.0 86 75.6
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 2.1e-31 138.7 72 84.7
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 2.1e-31 138.7 82 74.4
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 2.1e-31 138.7 82 78.0
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 2.7e-31 138.3 84 75.0
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 2.7e-31 138.3 84 75.0
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 2.7e-31 138.3 84 76.2
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 2.7e-31 138.3 84 76.2
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 3.5e-31 137.9 83 77.1
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.5e-31 137.9 84 75.0
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 3.5e-31 137.9 87 75.9
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 4.6e-31 137.5 69 87.0
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 4.6e-31 137.5 69 87.0
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 6.0e-31 137.1 83 74.7
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 6.0e-31 137.1 83 74.7
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 6.0e-31 137.1 83 74.7
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 6.0e-31 137.1 83 73.5
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 7.8e-31 136.7 83 74.7
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.0e-30 136.3 83 75.9
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.0e-30 136.3 83 73.5
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 1.7e-30 135.6 84 75.0
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 2.3e-30 135.2 84 75.0
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 3.0e-30 134.8 84 73.8
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 3.9e-30 134.4 84 73.8
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 3.9e-30 134.4 79 78.5
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 6.6e-30 133.7 80 72.5
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 6.6e-30 133.7 86 70.9
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 8.7e-30 133.3 82 73.2
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 1.5e-29 132.5 85 69.4
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 5.6e-29 130.6 85 69.4
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 5.6e-29 130.6 86 70.9
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 7.3e-29 130.2 84 76.2
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 9.6e-29 129.8 84 72.6
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.4e-27 125.9 74 79.7
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 4.0e-27 124.4 81 69.1
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.5e-26 122.5 75 73.3
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 4.5e-26 120.9 81 69.1
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 7.6e-26 120.2 71 73.2
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 2.2e-25 118.6 63 79.4
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 4.2e-24 114.4 58 82.8
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 9.3e-24 113.2 54 88.9
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 1.2e-23 112.8 69 71.0
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 3.5e-23 111.3 55 83.6
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.0e-22 109.8 51 90.2
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 8.7e-22 106.7 54 81.5
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 2.1e-20 102.1 61 70.5
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 1.4e-19 99.4 62 59.7
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 5.8e-18 94.0 62 71.0
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 5.5e-16 87.4 59 61.0
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 2.7e-15 85.1 44 79.5


User provided reference genes

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