Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.3e-157 558.9 298 100.0
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.0e-144 516.9 298 93.3
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 3.3e-143 511.9 298 93.3
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-142 510.0 298 91.6
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-142 510.0 298 93.0
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.2e-142 510.0 298 93.0
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 8.9e-141 503.8 296 91.6
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.9e-141 503.8 298 91.9
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 4.4e-140 501.5 298 91.9
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.4e-138 496.5 298 89.3
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 4.6e-137 491.5 293 90.1
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 3.9e-136 488.4 299 88.3
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.5e-135 486.5 303 88.4
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 3.6e-134 481.9 303 88.1
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 6.8e-133 477.6 302 87.7
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 2.0e-132 476.1 298 87.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 3.9e-128 461.8 305 85.6
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 1.1e-127 460.3 302 84.1
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.9e-122 443.0 363 71.3
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 6.6e-120 434.5 260 88.8
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 9.9e-108 394.0 305 74.4
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.8e-94 348.6 293 70.0
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 9.0e-93 344.4 193 95.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 1.7e-91 340.1 300 69.3
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 2.9e-91 339.3 298 64.8
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 3.2e-90 335.9 304 64.8
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 4.2e-90 335.5 300 63.7
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 5.5e-90 335.1 299 66.2
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-88 330.9 298 62.4
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.8e-88 330.1 215 80.0
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.3e-88 329.7 299 63.2
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.3e-88 329.7 302 62.6
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.9e-88 328.9 301 64.1
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.9e-88 328.9 302 62.6
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 3.9e-88 328.9 296 64.5
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 5.1e-88 328.6 304 63.8
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 6.7e-88 328.2 294 64.3
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 8.7e-88 327.8 298 62.1
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.9e-87 326.6 298 62.1
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.5e-87 326.2 300 63.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 5.7e-87 325.1 298 65.1
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 7.4e-87 324.7 295 64.4
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 9.6e-87 324.3 301 63.5
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.3e-86 323.9 295 64.4
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 1.3e-86 323.9 308 61.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.3e-86 323.9 300 64.0
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 1.6e-86 323.6 250 70.0
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 1.6e-86 323.6 300 62.7
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.1e-86 323.2 301 65.4
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 2.1e-86 323.2 256 69.9
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 2.1e-86 323.2 310 61.6
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.8e-86 322.8 299 64.5
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.8e-86 322.8 301 62.1
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.7e-86 322.4 290 64.1
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 4.8e-86 322.0 228 76.3
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 6.3e-86 321.6 302 61.3
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 8.2e-86 321.2 307 62.5
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 8.2e-86 321.2 303 64.0
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 8.2e-86 321.2 303 64.0
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 8.2e-86 321.2 302 62.9
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 8.2e-86 321.2 287 65.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 8.2e-86 321.2 296 63.5
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 8.2e-86 321.2 305 62.3
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 1.1e-85 320.9 306 62.7
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.1e-85 320.9 292 64.0
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.4e-85 320.5 295 63.7
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.8e-85 320.1 294 64.6
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.4e-85 319.7 305 61.0
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.4e-85 319.7 298 62.8
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 4.1e-85 318.9 214 79.4
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 6.9e-85 318.2 305 62.6
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 6.9e-85 318.2 302 62.9
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 9.0e-85 317.8 303 63.0
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.2e-84 317.4 288 62.8
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.5e-84 317.0 218 77.5
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.5e-84 317.0 303 61.7
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.5e-84 317.0 302 61.6
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.0e-84 316.6 303 63.4
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.6e-84 316.2 306 60.8
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 3.4e-84 315.8 244 71.7
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 4.5e-84 315.5 293 62.8
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 4.5e-84 315.5 302 64.6
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 5.9e-84 315.1 228 74.1
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 7.6e-84 314.7 298 63.4
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 7.6e-84 314.7 216 78.2
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 7.6e-84 314.7 205 80.0
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.7e-83 313.5 296 63.5
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 1.7e-83 313.5 299 60.2
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 2.2e-83 313.2 218 77.1
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.0e-83 312.0 303 62.0
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.5e-83 311.6 241 72.6
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 6.5e-83 311.6 299 60.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 8.4e-83 311.2 303 62.0
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.4e-82 310.5 244 69.3
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.4e-82 310.5 300 62.3
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.5e-82 309.7 285 64.2
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 5.5e-82 308.5 267 66.7
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.2e-82 308.1 229 73.8
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 3.6e-81 305.8 305 59.7
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.0e-80 304.3 275 64.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 1.0e-80 304.3 229 73.8
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.3e-80 303.9 198 79.8
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.3e-80 303.9 299 61.9
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.8e-80 303.5 195 81.0
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.8e-80 303.5 245 69.0
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.0e-80 302.8 296 60.5
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 3.0e-80 302.8 306 60.1
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 5.1e-80 302.0 274 64.2
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 6.7e-80 301.6 212 73.1
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 6.7e-80 301.6 298 61.4
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.7e-80 301.2 241 71.0
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.5e-79 300.4 262 66.0
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 5.7e-79 298.5 221 72.9
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 2.2e-78 296.6 288 61.5
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.8e-78 296.2 305 61.0
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 3.7e-78 295.8 288 61.5
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 6.3e-78 295.0 298 61.4
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 8.2e-78 294.7 189 81.0
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 2.4e-77 293.1 300 60.0
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 5.3e-77 292.0 240 69.2
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 1.2e-76 290.8 352 52.0
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 2.6e-76 289.7 360 50.8
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 4.5e-76 288.9 304 57.6
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 7.7e-76 288.1 210 72.4
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.3e-75 287.3 272 60.7
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.3e-75 287.3 208 72.1
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.1e-74 284.3 267 62.2
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 5.5e-74 282.0 208 69.7
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 5.1e-72 275.4 201 70.6
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 4.8e-70 268.9 279 57.7
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 6.3e-70 268.5 280 56.8
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 6.3e-70 268.5 288 55.9
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.4e-69 267.3 184 75.0
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.8e-69 266.9 222 65.8
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.4e-69 266.5 282 55.7
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.1e-69 264.6 199 69.8
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.9e-67 259.6 353 49.6
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 6.5e-67 258.5 204 66.2
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.4e-66 257.3 213 64.8
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.7e-65 253.1 243 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 4.7e-65 252.3 267 53.2
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 7.9e-65 251.5 182 73.6
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 3.3e-63 246.1 208 63.9
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.6e-60 237.3 182 68.7
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 4.8e-54 215.7 181 62.4
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 2.0e-52 210.3 205 58.0
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.8e-46 189.9 194 58.8
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.4e-45 186.8 183 56.3
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.9e-43 179.9 134 69.4
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-36 157.9 107 78.5
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 3.5e-36 156.4 274 39.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 4.7e-33 146.0 102 72.5
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 5.2e-32 142.5 192 42.7
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.5e-31 141.0 275 36.7
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 9.8e-31 138.3 89 77.5
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 1.2e-25 121.3 197 41.6
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 7.5e-23 112.1 171 48.5
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 7.0e-21 105.5 87 62.1
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.7e-20 103.6 78 74.4
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.5e-18 97.8 63 77.8
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 4.3e-18 96.3 63 76.2
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 2.9e-14 83.6 169 36.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.5e-10 71.2 65 60.0
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 7.6e-07 58.9 106 42.5


User provided reference genes

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