Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 5.4e-83 310.8 145 100.0
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 7.5e-77 290.4 145 92.4
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.7e-76 289.3 142 95.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.7e-76 289.3 142 95.1
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.7e-76 289.3 147 93.2
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.1e-75 286.6 147 93.2
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.8e-75 285.8 147 91.2
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.3e-73 279.6 145 89.7
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.3e-73 278.9 140 91.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 3.0e-73 278.5 145 89.0
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 9.5e-72 273.5 140 88.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 6.8e-70 267.3 140 85.0
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 5.2e-62 241.1 155 71.0
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 6.2e-55 217.6 141 68.8
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 3.1e-54 215.3 136 70.6
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 5.2e-54 214.5 141 67.4
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 5.2e-54 214.5 147 70.1
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 6.8e-54 214.2 147 69.4
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 6.8e-54 214.2 142 66.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 8.9e-54 213.8 139 67.6
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.2e-53 213.4 139 71.2
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.2e-53 213.4 133 71.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.4e-53 211.8 140 69.3
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.4e-53 211.5 135 71.1
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 5.8e-53 211.1 140 69.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 7.6e-53 210.7 139 67.6
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 9.9e-53 210.3 118 76.3
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.3e-52 209.9 138 68.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.7e-52 209.5 138 68.1
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.2e-52 209.1 137 68.6
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.2e-52 209.1 134 69.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 2.9e-52 208.8 115 78.3
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 3.8e-52 208.4 140 65.7
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.4e-52 207.6 143 67.1
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.1e-51 206.8 135 68.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.4e-51 206.5 144 65.3
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.9e-51 206.1 136 68.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.9e-51 206.1 144 65.3
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 3.2e-51 205.3 140 65.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 4.1e-51 204.9 145 65.5
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 9.2e-51 203.8 123 71.5
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.2e-50 203.4 136 67.6
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.2e-50 203.4 143 66.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.1e-50 202.6 117 71.8
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.1e-50 202.6 136 67.6
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.7e-50 202.2 136 67.6
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.7e-50 202.2 139 66.9
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 3.5e-50 201.8 137 65.7
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 6.0e-50 201.1 115 74.8
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 7.8e-50 200.7 143 64.3
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.0e-49 200.3 143 65.7
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.3e-49 199.9 141 65.2
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.3e-49 199.9 132 66.7
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 3.0e-49 198.7 137 66.4
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.9e-49 198.4 140 67.1
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 5.1e-49 198.0 138 64.5
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 6.6e-49 197.6 141 62.4
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.6e-49 197.6 133 64.7
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 6.6e-49 197.6 140 62.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 6.6e-49 197.6 135 66.7
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 6.6e-49 197.6 115 73.9
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 8.7e-49 197.2 140 66.4
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 8.7e-49 197.2 133 65.4
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.1e-48 196.8 133 66.9
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.1e-48 196.8 135 65.2
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.9e-48 196.1 136 62.5
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 2.5e-48 195.7 122 70.5
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.5e-48 195.7 125 68.8
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 2.5e-48 195.7 137 64.2
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 3.3e-48 195.3 119 72.3
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 3.3e-48 195.3 138 65.9
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 4.3e-48 194.9 136 61.8
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 4.3e-48 194.9 141 64.5
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.6e-48 194.5 136 61.8
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 5.6e-48 194.5 115 69.6
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 9.6e-48 193.7 136 64.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.2e-47 193.4 133 63.2
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.8e-47 192.2 137 62.8
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 4.7e-47 191.4 145 58.6
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 6.2e-47 191.0 126 63.5
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.2e-47 191.0 141 60.3
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.2e-47 191.0 131 65.6
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 8.1e-47 190.7 139 64.7
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.1e-46 190.3 134 64.2
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.1e-46 190.3 133 66.2
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.8e-46 189.5 126 62.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 5.2e-46 188.0 139 63.3
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.2e-46 188.0 142 62.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.5e-45 186.4 135 62.2
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.5e-45 186.4 125 61.6
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.3e-44 183.3 134 60.4
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.8e-44 181.8 115 66.1
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.8e-44 181.8 115 66.1
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 4.9e-44 181.4 165 55.2
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.1e-43 180.3 143 61.5
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.9e-43 179.5 135 62.2
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.9e-43 179.5 134 59.7
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.2e-42 176.8 133 61.7
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.7e-42 175.6 109 68.8
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-38 163.7 139 60.4
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.0e-33 147.1 119 59.7
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.3e-33 146.0 141 51.8
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 6.7e-33 144.4 116 56.9
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.1e-32 143.7 81 75.3
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 6.2e-31 137.9 81 72.8
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 2.4e-27 125.9 114 46.5
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 9.3e-27 124.0 75 69.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 7.9e-26 120.9 135 47.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 3.9e-25 118.6 92 56.5
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 6.7e-25 117.9 92 55.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.5e-24 115.9 96 49.0
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 2.1e-23 112.8 78 64.1
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 4.8e-23 111.7 89 50.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.5e-21 106.7 117 47.0
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.9e-20 102.4 55 78.2
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 4.9e-20 101.7 93 43.0
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 8.4e-20 100.9 141 44.7
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 6.0e-18 94.7 93 46.2
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-16 90.1 99 38.4
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.9e-16 89.7 92 44.6
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-12 77.0 67 50.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.7e-12 76.6 56 58.9
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 4.6e-10 68.6 41 70.7
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 2.0e-08 63.2 70 44.3
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.2e-07 59.7 65 46.2
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 6.3e-07 58.2 54 55.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.2e-07 57.8 39 61.5
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 2.4e-06 56.2 88 38.6


User provided reference genes

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