Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.5e-104 382.9 191 100.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.2e-99 365.2 191 95.3
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-98 362.5 191 93.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 7.8e-98 360.5 191 92.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-97 359.8 191 92.7
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.3e-97 359.8 191 92.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 3.9e-97 358.2 191 92.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.0e-97 357.8 191 92.1
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 6.6e-97 357.5 191 91.1
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.8e-95 352.1 191 90.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.1e-94 348.6 190 88.9
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 4.9e-92 341.3 189 87.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 8.1e-87 323.9 191 82.7
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-82 308.5 186 78.0
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.9e-81 305.1 186 76.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 6.6e-81 304.3 186 79.0
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.6e-81 304.3 186 78.5
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.3e-80 302.0 186 78.5
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.3e-80 302.0 186 76.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.6e-79 299.7 190 78.9
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.8e-79 298.9 186 76.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 2.8e-79 298.9 174 81.0
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.4e-78 296.6 185 76.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 4.0e-78 295.0 175 80.0
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 4.0e-78 295.0 186 78.5
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.2e-78 294.7 179 79.9
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 6.9e-78 294.3 185 76.8
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 6.9e-78 294.3 190 72.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.6e-77 292.4 186 77.4
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.4e-77 292.0 184 75.0
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.4e-77 292.0 175 80.0
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 3.4e-77 292.0 186 76.9
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.4e-77 291.6 186 76.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 5.8e-77 291.2 186 76.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.3e-76 290.0 186 77.4
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.2e-76 289.3 186 74.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.9e-76 288.1 175 77.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.9e-76 288.1 175 77.1
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.4e-75 286.6 186 73.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.4e-75 285.8 172 81.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 4.2e-75 285.0 191 71.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 4.2e-75 285.0 186 75.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 5.4e-75 284.6 188 75.5
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-74 283.1 186 72.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 3.5e-74 282.0 186 73.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.6e-74 281.6 172 77.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 7.8e-74 280.8 171 77.2
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-73 280.4 184 72.8
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.0e-73 280.4 163 82.2
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.7e-73 279.6 186 71.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.3e-73 279.3 191 71.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 3.0e-73 278.9 175 75.4
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.9e-73 278.5 172 76.2
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 3.9e-73 278.5 184 71.7
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 5.1e-73 278.1 182 72.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 8.7e-73 277.3 187 71.1
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.7e-73 277.3 172 78.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 8.7e-73 277.3 172 76.7
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.1e-72 276.9 182 71.4
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-72 276.6 187 71.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-72 276.6 187 71.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.5e-72 276.6 187 71.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.5e-72 275.8 187 70.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.3e-72 275.0 174 75.3
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.3e-72 275.0 163 79.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.3e-72 274.2 187 70.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 7.3e-72 274.2 184 71.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.1e-71 272.7 172 75.6
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.1e-71 272.7 172 75.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.1e-71 272.7 169 76.9
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.8e-71 272.3 172 73.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 2.8e-71 272.3 182 72.5
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.0e-70 268.5 172 73.8
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 184 69.6
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 9.0e-70 267.3 184 70.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.2e-69 266.9 172 73.8
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.2e-69 266.9 186 68.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.0e-69 266.2 158 80.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.5e-69 265.0 174 73.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 7.6e-69 264.2 171 76.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 7.6e-69 264.2 172 73.8
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 9.9e-69 263.8 188 64.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.2e-68 262.7 170 72.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.2e-68 262.7 172 73.3
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.9e-68 262.3 172 73.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 8.4e-68 260.8 170 74.7
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.1e-67 260.4 134 93.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.4e-67 259.2 186 68.3
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.4e-67 258.1 177 69.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.1e-67 257.7 174 69.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 7.1e-67 257.7 156 78.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.2e-66 256.9 172 72.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.6e-66 256.5 163 75.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.1e-66 256.1 160 76.9
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 6.0e-66 254.6 168 72.6
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.0e-66 254.6 163 72.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.0e-65 253.8 162 73.5
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 8.7e-65 250.8 161 74.5
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 8.7e-65 250.8 168 71.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.5e-64 249.2 163 71.8
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.3e-64 248.8 165 73.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.3e-64 248.8 165 73.3
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.6e-64 248.1 162 73.5
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.6e-64 248.1 172 70.3
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.3e-63 246.9 170 70.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-63 246.9 170 71.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.3e-63 246.9 169 70.4
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.8e-63 245.7 172 69.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.6e-63 245.4 175 68.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.8e-63 245.0 169 70.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.1e-62 243.8 162 71.0
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.1e-62 243.8 169 67.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.8e-62 243.0 160 73.1
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.4e-62 242.7 163 71.2
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.0e-61 239.6 160 71.9
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.8e-61 238.0 169 67.5
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.8e-61 238.0 163 70.6
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 7.6e-61 237.7 168 64.9
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 7.6e-61 237.7 160 70.0
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 7.6e-61 237.7 169 67.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.3e-60 236.9 162 71.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.7e-60 236.5 164 70.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.2e-60 236.1 159 69.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.9e-60 235.7 168 66.7
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.8e-60 235.3 160 70.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.1e-59 233.8 168 69.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.9e-59 233.0 174 64.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.2e-59 232.3 160 68.8
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 3.2e-59 232.3 169 64.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.2e-58 230.3 168 66.1
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-57 226.5 161 70.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-57 226.5 161 70.2
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.7e-57 224.6 161 69.6
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.7e-57 224.2 161 69.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.1e-56 223.8 186 61.3
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 4.8e-55 218.4 160 63.1
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.1e-54 217.2 161 61.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-54 216.5 175 64.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.4e-54 216.1 134 74.6
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.3e-54 214.9 151 68.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.0e-54 214.2 159 66.0
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.4e-53 212.2 192 57.3
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 5.8e-53 211.5 160 63.1
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.1e-51 207.2 161 67.1
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.3e-51 204.1 156 62.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.6e-50 203.4 176 59.1
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.6e-50 201.8 160 59.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 7.9e-50 201.1 160 61.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-48 197.2 129 77.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.5e-48 196.1 156 65.4
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.8e-47 191.8 172 52.3
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.8e-47 191.8 133 70.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.3e-47 191.4 187 55.6
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.2e-45 187.2 119 78.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.5e-45 185.3 162 61.1
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.8e-44 182.2 159 56.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.5e-43 179.5 131 67.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 3.2e-43 179.1 142 56.3
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.0e-41 172.6 177 51.4
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.3e-40 169.1 129 63.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.3e-40 168.7 177 52.0
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.7e-40 168.3 177 51.4
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.5e-36 154.5 116 69.8
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.0e-33 146.0 97 72.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.3e-32 142.5 90 75.6
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 7.4e-32 141.4 171 47.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.1e-30 135.6 94 66.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.9e-29 131.7 89 70.8
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.9e-29 131.7 150 41.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.0e-28 131.0 91 64.8
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-24 116.3 73 69.9
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.2e-19 99.0 66 72.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-18 95.9 79 58.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.7e-13 79.7 107 43.9
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 5.5e-11 72.0 79 48.1
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 5.5e-11 72.0 173 30.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-11 71.6 69 53.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 5.2e-09 65.5 36 75.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.8e-09 65.1 36 77.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.7e-07 60.5 172 29.7
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 6.3e-07 58.5 61 39.3
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.1e-06 57.8 32 75.0
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-06 56.2 36 66.7


User provided reference genes

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