Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 5.4e-60 234.2 123 100.0
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 3.4e-54 214.9 123 89.4
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 4.4e-54 214.5 123 90.2
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 2.9e-53 211.8 122 91.0
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 2.7e-51 205.3 122 90.2
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 2.7e-51 205.3 122 90.2
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 3.5e-51 204.9 122 88.5
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 1.3e-50 203.0 134 81.3
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 5.1e-50 201.1 117 89.7
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 9.6e-49 196.8 124 86.3
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 3.6e-48 194.9 117 88.9
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 1.2e-43 179.9 118 83.9
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 3.0e-42 175.3 113 84.1
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 2.2e-37 159.1 112 75.0
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 4.9e-37 157.9 113 73.5
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 4.9e-37 157.9 113 73.5
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 6.4e-37 157.5 103 77.7
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 8.4e-37 157.1 113 74.3
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 8.4e-37 157.1 114 71.9
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 1.1e-36 156.8 112 73.2
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 3.2e-36 155.2 112 72.3
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 1.2e-35 153.3 114 73.7
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 1.2e-35 153.3 114 74.6
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 1.6e-35 152.9 121 68.6
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.6e-35 152.9 116 69.0
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 1.6e-35 152.9 116 69.0
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.6e-35 152.9 116 69.0
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 2.1e-35 152.5 120 69.2
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.1e-35 152.5 120 69.2
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 3.5e-35 151.8 109 73.4
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 4.6e-35 151.4 119 69.7
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 6.0e-35 151.0 93 82.8
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 7.9e-35 150.6 114 73.7
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 7.9e-35 150.6 114 73.7
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 7.9e-35 150.6 114 73.7
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.3e-34 149.8 110 72.7
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 2.3e-34 149.1 108 73.1
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 3.0e-34 148.7 113 69.9
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 3.0e-34 148.7 113 69.9
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 3.0e-34 148.7 114 68.4
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 5.1e-34 147.9 102 75.5
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 6.7e-34 147.5 116 69.8
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 6.7e-34 147.5 114 69.3
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 6.7e-34 147.5 114 70.2
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 8.7e-34 147.1 103 73.8
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 1.1e-33 146.7 102 75.5
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 1.1e-33 146.7 102 74.5
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 2.5e-33 145.6 114 67.5
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 2.5e-33 145.6 117 66.7
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 3.3e-33 145.2 102 78.4
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 3.3e-33 145.2 115 68.7
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 3.3e-33 145.2 110 70.9
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 4.3e-33 144.8 101 73.3
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 4.3e-33 144.8 107 72.0
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.6e-33 144.4 120 65.8
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 9.6e-33 143.7 106 70.8
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 9.6e-33 143.7 114 68.4
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.3e-32 143.3 111 66.7
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 2.8e-32 142.1 110 69.1
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 3.7e-32 141.7 110 69.1
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 3.7e-32 141.7 107 71.0
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 4.8e-32 141.4 99 74.7
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 6.2e-32 141.0 114 69.3
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 8.2e-32 140.6 108 68.5
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 1.4e-31 139.8 100 73.0
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.4e-31 139.8 110 67.3
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 1.4e-31 139.8 97 76.3
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 1.4e-31 139.8 102 68.6
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 1.8e-31 139.4 95 74.7
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 1.8e-31 139.4 114 66.7
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 2.4e-31 139.0 88 79.5
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 3.1e-31 138.7 111 64.9
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 3.1e-31 138.7 105 70.5
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 3.1e-31 138.7 102 70.6
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 3.1e-31 138.7 106 69.8
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 4.0e-31 138.3 114 65.8
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 9.0e-31 137.1 107 69.2
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.5e-30 136.3 106 68.9
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.5e-30 136.3 112 67.0
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 2.6e-30 135.6 114 64.9
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 4.5e-30 134.8 116 62.1
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 4.5e-30 134.8 110 66.4
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 5.8e-30 134.4 101 70.3
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 5.8e-30 134.4 112 62.5
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 7.6e-30 134.0 121 62.0
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 1.3e-29 133.3 89 71.9
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 4.9e-29 131.3 109 67.9
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 6.5e-29 131.0 116 61.2
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 1.9e-28 129.4 104 67.3
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 2.5e-28 129.0 108 66.7
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 3.2e-28 128.6 82 78.0
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 4.2e-28 128.3 108 66.7
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 5.5e-28 127.9 117 62.4
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 5.5e-28 127.9 81 79.0
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 1.2e-27 126.7 102 63.7
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.6e-27 126.3 82 79.3
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 2.5e-25 119.0 154 48.1
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 4.3e-25 118.2 114 61.4
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 3.7e-24 115.2 82 76.8
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 3.7e-24 115.2 82 76.8
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 3.1e-23 112.1 83 75.9
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 6.9e-23 110.9 84 73.8
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 6.9e-23 110.9 103 60.2
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 1.0e-21 107.1 82 64.6
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 5.5e-20 101.3 82 58.5
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 1.6e-19 99.8 58 87.9
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 7.9e-19 97.4 58 86.2
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.4e-18 96.7 65 72.3
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 1.8e-18 96.3 81 54.3
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 5.1e-18 94.7 77 72.7
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 8.8e-18 94.0 58 81.0
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 5.7e-17 91.3 84 59.5
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 5.7e-17 91.3 84 59.5
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 7.4e-17 90.9 58 75.9
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 9.7e-17 90.5 78 70.5
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 6.3e-16 87.8 114 41.2
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 9.1e-15 84.0 80 52.5
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 4.5e-14 81.6 85 52.9
BcaB04g18782 Brassica carinata HOM05D006721 ORTHO05D000476 7.7e-14 80.9 67 65.7
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 2.9e-13 79.0 57 66.7
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 3.2e-12 75.5 64 54.7
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 9.4e-12 73.9 85 45.9
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 1.2e-11 73.6 49 77.6
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 3.0e-10 68.9 41 82.9
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 3.9e-10 68.6 41 82.9
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 3.9e-10 68.6 41 82.9
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 7.4e-09 64.3 62 53.2
BcaC06g35701 Brassica carinata HOM05D000809 ORTHO05D001196 8.2e-08 60.8 35 85.7
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 5.3e-07 58.2 46 58.7
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 3.4e-06 55.5 28 96.4


User provided reference genes

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