Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.6e-140 501.1 238 100.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 4.9e-118 427.9 202 99.0
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-117 426.8 204 99.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-117 426.8 204 99.0
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 4.2e-117 424.9 204 98.5
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 6.7e-115 417.5 206 95.1
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.3e-114 415.2 197 99.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.3e-114 415.2 225 90.7
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 7.4e-114 414.1 224 91.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 7.4e-114 414.1 224 91.1
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.8e-113 412.1 197 99.0
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.2e-111 406.8 206 93.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.4e-111 405.2 208 93.3
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.4e-111 405.2 208 93.3
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.3e-110 403.3 208 93.3
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.9e-109 399.4 202 94.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-109 398.7 208 93.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-109 398.7 208 93.3
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.2e-109 398.7 206 93.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-109 397.9 204 94.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-109 397.9 204 94.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-109 397.9 204 94.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-109 397.9 204 94.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.5e-109 397.9 198 97.0
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.5e-109 397.9 198 97.0
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.5e-109 397.9 198 97.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 9.4e-109 397.1 207 92.3
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.6e-108 396.4 208 92.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.6e-108 396.4 208 92.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.9e-108 394.0 209 92.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.0e-107 393.7 204 93.1
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-107 393.7 207 91.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.0e-107 392.1 208 91.8
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.0e-107 392.1 203 93.1
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.8e-107 390.6 208 90.9
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 4.3e-106 388.3 204 90.7
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 6.3e-105 384.4 208 90.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.2e-103 380.2 208 89.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.2e-103 380.2 208 89.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.2e-103 380.2 208 89.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.2e-103 380.2 208 89.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.2e-103 380.2 208 89.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.2e-103 380.2 208 89.4
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.2e-102 375.9 209 89.5
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 9.4e-101 370.5 202 90.1
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.6e-100 369.8 202 89.6
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.7e-100 368.2 204 87.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 8.2e-97 357.5 202 85.6
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 8.2e-97 357.5 202 85.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 2.0e-95 352.8 178 94.4
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.9e-95 351.3 196 86.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 3.8e-94 348.6 195 88.2
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.0e-94 348.2 202 84.7
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 8.5e-94 347.4 192 87.5
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.6e-92 343.2 209 83.7
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.1e-92 342.8 184 89.7
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 3.7e-89 332.0 175 90.9
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 4.1e-88 328.6 184 87.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.3e-88 328.2 194 85.6
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.0e-87 326.2 201 78.1
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-86 322.8 203 80.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.5e-86 321.2 172 89.0
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 8.5e-86 320.9 164 92.1
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.5e-85 318.2 165 93.3
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-83 312.0 210 77.1
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-82 310.5 144 99.3
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.0e-75 285.4 165 84.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 9.8e-74 280.8 165 83.6
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 6.3e-73 278.1 206 69.9
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.3e-73 278.1 206 69.9
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.4e-72 276.2 195 70.8
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.7e-71 272.7 152 85.5
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 5.9e-71 271.6 195 69.7
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 2.3e-70 269.6 194 70.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 9.5e-69 264.2 130 93.8
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-68 263.8 134 94.8
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.2e-68 263.8 136 94.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.8e-68 262.7 208 67.8
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.0e-67 260.8 171 77.2
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.0e-66 256.5 170 76.5
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.7e-65 253.4 129 90.7
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.8e-64 250.0 124 99.2
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 9.2e-64 247.7 195 64.6
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-58 228.8 117 89.7
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-57 227.3 112 94.6
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 3.6e-52 209.1 104 98.1
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.7e-52 208.8 219 56.2
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.2e-50 204.1 90 100.0
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.0e-50 203.4 108 95.4
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 5.4e-48 195.3 117 88.0
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-47 193.7 172 60.5
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 3.5e-47 192.6 197 52.8
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.6e-46 188.0 206 53.4
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 4.0e-43 179.1 107 77.6
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 9.9e-42 174.5 89 88.8
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 8.3e-41 171.4 91 91.2
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-38 164.5 109 77.1
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 4.0e-35 152.5 72 95.8
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 5.4e-32 142.1 137 57.7
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 3.5e-31 139.4 77 83.1
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.3e-30 137.5 66 95.5
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 7.3e-29 131.7 66 95.5
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-27 127.1 80 77.5
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 5.1e-22 109.0 197 37.6
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-21 107.8 47 93.6
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.3e-21 105.1 64 73.4
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 5.3e-19 99.0 49 93.9
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.8e-18 95.5 163 41.1
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 5.4e-16 89.0 51 70.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-15 87.4 84 53.6
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.0e-14 84.7 45 88.9
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 1.3e-14 84.3 46 87.0
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.8e-14 84.0 74 58.1
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.9e-14 82.8 52 86.5
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 4.8e-12 75.9 38 92.1
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.3e-11 72.4 198 30.8
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 5.8e-10 68.9 50 60.0
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 5.8e-10 68.9 42 71.4
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.4e-09 65.1 45 73.3
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 4.2e-08 62.8 83 42.2
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.1e-07 60.5 36 80.6


User provided reference genes

Program Settings