Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.7e-114 414.8 202 100.0
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 2.1e-109 399.1 219 91.3
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 5.5e-102 374.4 218 87.2
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 8.2e-98 360.5 210 86.7
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 7.0e-97 357.5 199 89.4
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 9.1e-97 357.1 218 83.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.2e-96 356.7 220 83.6
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.5e-95 350.9 208 84.6
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.5e-95 350.9 208 84.6
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 8.5e-95 350.5 200 87.0
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-94 350.1 200 87.0
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-94 350.1 200 87.0
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-94 348.2 209 84.7
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-94 348.2 209 84.7
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-94 348.2 209 84.7
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 7.2e-94 347.4 218 80.7
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 5.2e-92 341.3 184 91.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.4e-91 338.6 188 88.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.4e-91 338.6 188 88.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.4e-91 338.6 188 88.8
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-91 337.0 209 81.8
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-91 337.0 209 81.8
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 9.7e-91 337.0 209 81.8
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.4e-89 333.2 206 82.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 7.0e-89 330.9 201 83.1
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.7e-87 326.2 199 83.4
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.7e-87 326.2 200 82.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.5e-87 324.3 172 91.9
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 8.5e-87 323.9 184 87.5
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.5e-86 323.2 172 91.3
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 5.5e-86 321.2 197 83.2
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.6e-85 319.7 209 78.0
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 4.7e-85 318.2 208 79.3
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 8.0e-85 317.4 199 80.4
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 8.0e-85 317.4 168 91.7
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 5.7e-83 311.2 167 90.4
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-82 309.7 175 86.3
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 2.2e-82 309.3 215 74.9
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 2.2e-82 309.3 215 74.9
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 6.3e-82 307.8 209 76.1
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 8.3e-82 307.4 187 82.9
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.1e-81 307.0 189 80.4
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-81 306.2 169 87.6
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 4.1e-81 305.1 199 78.4
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 4.1e-81 305.1 190 80.5
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 9.1e-81 303.9 180 82.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.6e-80 303.1 148 96.6
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 5.9e-80 301.2 202 75.2
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.9e-78 296.2 167 87.4
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.2e-77 293.5 170 85.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 6.8e-76 287.7 184 77.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.8e-74 282.3 199 73.4
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-74 282.3 175 82.3
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 8.3e-74 280.8 146 91.8
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-73 279.6 197 71.6
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 3.5e-72 275.4 149 89.3
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 8.0e-69 264.2 155 81.9
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.4e-67 258.8 216 67.1
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.4e-66 254.6 168 76.2
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 6.4e-66 254.6 149 81.9
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.1e-65 253.8 164 78.7
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 7.0e-65 251.1 175 75.4
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 4.3e-62 241.9 150 80.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.4e-58 228.0 154 73.4
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 7.1e-57 224.6 126 83.3
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.4e-51 205.7 109 84.4
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 7.6e-51 204.5 172 65.7
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.2e-48 197.2 110 85.5
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.2e-45 187.2 140 72.9
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.1e-44 184.1 205 55.6
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.1e-44 184.1 205 55.6
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 1.7e-39 166.8 92 90.2
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 3.9e-39 165.6 111 76.6
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 3.4e-27 125.9 91 67.0
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-22 110.5 117 54.7
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 4.3e-22 109.0 67 79.1
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.5e-19 100.5 53 94.3
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.0e-15 86.3 95 52.6
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.7e-15 84.7 54 72.2
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-14 84.3 51 74.5
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-14 84.0 183 36.6
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-13 79.7 64 64.1
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 9.0e-12 74.7 68 58.8
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.5e-11 73.9 53 66.0
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.6e-11 71.6 40 87.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.6e-08 63.9 32 90.6
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 7.4e-06 55.1 31 87.1


User provided reference genes

Program Settings