Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.6e-249 865.5 416 100.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 7.6e-223 776.9 380 99.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 7.6e-223 776.9 380 99.2
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.6e-218 760.8 380 97.9
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.8e-217 758.4 380 97.4
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 6.2e-217 757.3 380 97.4
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.5e-199 698.0 401 87.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.9e-197 692.6 397 87.9
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.9e-197 692.6 397 87.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 7.2e-197 690.6 401 86.3
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.5e-194 682.9 402 85.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.9e-194 682.6 397 86.4
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.5e-194 682.2 400 86.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.5e-194 682.2 400 86.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.3e-193 679.9 403 85.9
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.3e-193 679.9 397 86.1
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.7e-193 678.3 401 85.3
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.7e-193 678.3 401 85.3
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-193 677.9 410 83.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.5e-191 672.9 396 86.1
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.5e-190 667.2 401 84.8
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.5e-189 665.6 401 84.5
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.2e-188 663.3 399 85.0
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 3.0e-187 658.7 399 83.2
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.0e-186 656.0 401 84.8
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-184 649.4 399 82.7
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-184 649.4 399 82.7
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-184 649.4 399 82.7
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-184 649.4 399 82.7
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.9e-183 644.4 399 82.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.9e-183 644.4 399 82.2
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-182 642.1 378 85.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.8e-182 641.7 399 82.2
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.8e-179 630.6 399 81.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 8.8e-179 630.6 402 82.3
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.9e-175 617.8 399 79.9
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-174 615.5 367 84.2
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 8.5e-174 614.0 401 79.1
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 5.7e-170 601.3 404 79.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 5.7e-170 601.3 404 79.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 5.7e-170 601.3 404 79.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 5.7e-170 601.3 404 79.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 5.7e-170 601.3 404 79.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 5.7e-170 601.3 404 79.7
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-168 596.7 383 80.9
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.4e-163 580.1 351 83.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.2e-156 557.0 399 73.4
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.1e-152 543.9 377 75.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.3e-149 532.3 315 85.1
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.3e-147 526.2 329 81.2
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-145 519.2 395 70.9
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 3.0e-142 509.2 331 79.8
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-132 476.5 287 84.0
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.8e-132 476.1 337 75.4
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-127 459.5 398 64.6
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 6.8e-123 444.9 235 90.6
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-119 433.0 277 79.4
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.0e-118 429.5 311 74.9
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.9e-118 429.1 260 85.0
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 9.6e-109 397.9 205 96.6
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.5e-106 390.6 198 98.0
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.9e-106 387.9 268 75.4
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.4e-105 385.2 302 70.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.9e-102 375.9 315 68.3
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.1e-100 370.2 218 86.2
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.4e-99 366.7 181 99.4
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.8e-98 362.1 276 71.7
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.2e-97 360.1 218 84.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 5.5e-96 355.5 218 84.4
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.5e-96 355.5 218 84.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.5e-95 352.8 218 83.9
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 7.9e-95 351.7 218 83.5
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-92 344.0 218 82.1
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.8e-91 340.5 286 66.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 4.5e-90 335.9 218 81.2
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 4.5e-90 335.9 191 89.5
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-83 313.2 192 79.2
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 3.1e-83 313.2 192 79.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.9e-83 312.0 297 57.6
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.9e-82 308.9 297 57.2
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.9e-75 285.4 170 86.5
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-72 278.1 136 99.3
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.1e-71 273.9 159 84.9
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-68 264.6 121 99.2
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-68 263.1 119 100.0
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-64 250.4 161 78.3
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 8.8e-62 241.9 115 95.7
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.8e-62 241.9 137 86.1
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.8e-60 236.1 137 86.1
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 2.6e-58 230.3 122 94.3
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.5e-56 224.6 144 80.6
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 1.9e-56 224.2 148 73.6
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-52 211.1 123 87.0
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-52 210.7 130 81.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.3e-52 209.1 125 84.8
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 8.2e-52 208.8 118 90.7
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 6.3e-44 182.6 115 80.9
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.3e-44 182.6 165 61.8
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.1e-43 179.9 619 30.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.7e-42 177.2 115 80.9
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.6e-39 167.9 116 74.1
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.8e-38 162.2 94 88.3
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 4.9e-36 156.4 103 74.8
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.6e-34 151.4 75 97.3
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.7e-33 147.9 108 71.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-32 143.7 116 72.4
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-32 143.7 116 72.4
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 4.0e-30 136.7 116 64.7
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 5.7e-29 132.9 68 94.1
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 5.7e-29 132.9 65 96.9
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-28 130.6 108 67.6
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-27 128.3 93 73.1
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 4.1e-27 126.7 107 66.4
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 5.9e-26 122.9 102 67.6
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 5.9e-26 122.9 106 66.0
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-25 121.3 62 93.5
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.6e-25 119.4 98 65.3
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.6e-24 116.3 96 66.7
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.0e-23 112.5 74 78.4
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 3.1e-22 110.5 71 73.2
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-21 107.5 69 72.5
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 5.8e-21 106.3 60 85.0
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-20 105.1 168 45.2
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 4.9e-20 103.2 60 83.3
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.7e-18 97.4 97 55.7
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.7e-18 97.4 68 73.5
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.6e-17 92.8 167 37.7
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.5e-16 90.9 91 59.3
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.8e-15 87.4 48 85.4
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 3.6e-15 87.0 43 93.0
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.8e-14 84.7 75 65.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-12 78.2 67 61.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.7e-12 77.0 49 75.5
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 4.9e-12 76.6 51 74.5
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-11 74.3 63 61.9
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-11 73.6 47 74.5
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.6e-10 71.6 88 47.7
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.5e-10 70.5 48 75.0
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.0e-10 69.7 47 74.5
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.9e-08 64.7 53 62.3
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 1.2e-07 62.0 29 86.2
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.6e-07 61.6 48 66.7
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.8e-07 60.8 35 85.7
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 2.8e-07 60.8 28 96.4


User provided reference genes

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