Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 6.7e-117 424.1 223 100.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 3.9e-101 371.7 198 99.5
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 3.9e-101 371.7 198 99.5
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 3.9e-101 371.7 198 99.5
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 3.9e-101 371.7 198 99.5
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 3.9e-101 371.7 198 99.5
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 3.9e-101 371.7 198 99.5
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 8.8e-101 370.5 198 99.0
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 7.4e-100 367.5 198 98.0
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 8.2e-99 364.0 198 97.5
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 8.2e-99 364.0 198 97.5
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.6e-97 359.8 198 96.5
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.6e-97 359.8 198 96.5
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.6e-97 359.8 198 96.5
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 2.6e-97 359.0 210 91.9
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.0e-96 357.1 210 91.4
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-96 356.3 198 95.5
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-96 356.3 198 95.5
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-96 356.3 198 95.5
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-96 356.3 198 95.5
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 2.9e-96 355.5 196 96.9
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 2.9e-96 355.5 196 96.9
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 6.5e-96 354.4 198 96.0
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 6.5e-96 354.4 198 96.0
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.1e-95 353.6 198 95.5
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.1e-95 353.6 198 95.5
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 1.1e-95 353.6 198 95.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 1.9e-95 352.8 198 95.5
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.9e-95 352.8 198 95.5
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 9.4e-95 350.5 200 95.5
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.6e-94 349.7 198 94.4
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 2.7e-94 349.0 198 94.9
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 2.7e-94 349.0 198 94.4
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 4.7e-94 348.2 200 95.0
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 8.8e-93 344.0 208 89.4
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 8.8e-93 344.0 208 89.4
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 2.6e-92 342.4 208 88.9
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 2.2e-91 339.3 183 97.8
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 3.2e-87 325.5 190 92.1
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.5e-87 324.7 198 87.9
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.7e-86 322.4 197 87.8
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.7e-86 321.6 198 86.4
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-85 320.5 181 94.5
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 6.8e-85 317.8 176 96.0
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.8e-83 312.4 198 85.4
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.6e-81 306.6 199 84.4
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.0e-80 303.9 197 84.8
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 9.4e-79 297.4 210 80.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.8e-76 287.3 198 82.3
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 7.0e-74 281.2 154 95.5
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.0e-69 267.3 221 71.5
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 4.9e-67 258.5 148 91.9
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 4.9e-67 258.5 149 91.9
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.3e-67 257.7 176 81.8
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 5.4e-66 255.0 140 95.7
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 1.8e-61 240.0 130 96.9
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 3.4e-60 235.7 130 96.9
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.0e-57 226.5 148 81.1
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 3.5e-57 225.7 124 96.0
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.3e-56 223.8 208 66.8
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 5.8e-52 208.4 193 63.7
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-51 206.8 117 93.2
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 7.3e-47 191.4 103 99.0
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 2.2e-43 179.9 115 86.1
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 4.9e-43 178.7 100 92.0
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.1e-37 159.5 184 58.2
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.0e-36 156.8 89 96.6
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 3.4e-36 156.0 95 92.6
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 3.4e-36 156.0 88 97.7
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 5.6e-31 138.7 76 94.7
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.5e-28 129.0 175 53.1
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 2.2e-27 126.7 93 74.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.3e-24 116.7 131 58.8
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 6.7e-24 115.2 63 96.8
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.2e-22 108.6 64 81.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.1e-21 106.3 57 86.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.5e-20 102.4 61 86.9
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 8.4e-19 98.2 71 84.5
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-17 92.8 57 89.5
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.1e-16 89.0 63 79.4
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.9e-15 87.0 54 85.2
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 6.9e-13 78.6 44 95.5
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.2e-12 77.8 89 60.7
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-11 73.9 37 97.3
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-10 70.9 37 94.6
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-10 70.9 37 94.6
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 2.3e-08 63.5 40 85.0
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 3.3e-07 59.7 72 54.2
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 3.3e-07 59.7 72 54.2
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 2.1e-06 57.0 72 52.8


User provided reference genes

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