Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.1e-66 256.5 131 100.0
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.9e-63 245.7 131 95.4
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 6.2e-62 240.7 130 93.1
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 8.1e-62 240.4 132 93.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 8.1e-62 240.4 132 93.2
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 2.3e-61 238.8 130 93.1
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 5.8e-60 234.2 131 91.6
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 5.8e-60 234.2 131 91.6
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 7.5e-60 233.8 131 91.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 9.8e-60 233.4 130 90.8
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 9.8e-60 233.4 130 90.8
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 9.8e-60 233.4 130 90.8
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 6.0e-57 224.2 134 87.3
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.7e-56 222.6 134 87.3
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 8.1e-54 213.8 134 85.1
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.5e-49 198.4 121 81.8
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 6.0e-49 197.6 132 79.5
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.1e-47 193.4 132 80.3
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 5.6e-47 191.0 134 79.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.6e-46 189.5 131 78.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.1e-46 189.1 132 80.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.8e-46 188.7 132 78.8
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.6e-46 188.3 132 78.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.6e-46 188.3 119 79.8
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 6.2e-46 187.6 133 72.9
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 6.2e-46 187.6 131 77.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-45 186.8 132 79.5
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.4e-45 186.4 131 78.6
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-45 186.0 131 76.3
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 4.0e-45 184.9 133 77.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.0e-45 184.9 131 74.0
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.0e-45 184.9 131 74.0
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 4.0e-45 184.9 132 77.3
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 4.0e-45 184.9 132 77.3
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 4.0e-45 184.9 132 77.3
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.2e-45 184.5 131 72.5
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.2e-45 184.5 119 79.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 5.2e-45 184.5 132 76.5
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.2e-44 183.3 132 76.5
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.2e-44 183.3 132 76.5
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.2e-44 183.3 132 75.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.6e-44 182.2 121 80.2
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 4.4e-44 181.4 131 72.5
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 5.8e-44 181.0 121 76.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 7.6e-44 180.6 131 71.0
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 7.6e-44 180.6 131 74.8
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.9e-44 180.3 122 74.6
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.3e-43 179.9 133 74.4
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.3e-43 179.9 132 73.5
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.2e-43 179.1 117 80.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 131 74.8
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.2e-43 179.1 131 74.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 2.9e-43 178.7 131 74.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.8e-43 178.3 132 72.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 3.8e-43 178.3 117 80.3
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.8e-43 178.3 136 74.3
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 6.4e-43 177.6 131 74.8
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 8.4e-43 177.2 131 72.5
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.1e-42 176.8 121 73.6
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.4e-42 176.4 132 75.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.9e-42 176.0 132 71.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.4e-42 175.6 127 69.3
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.2e-42 175.3 121 75.2
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.2e-42 174.9 132 72.7
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 5.4e-42 174.5 120 74.2
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 5.4e-42 174.5 132 72.0
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.1e-42 174.1 120 72.5
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 7.1e-42 174.1 132 74.2
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.6e-41 172.9 132 71.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-41 172.9 132 72.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.1e-41 172.6 112 79.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.7e-41 172.2 131 70.2
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.5e-41 171.8 125 73.6
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 4.6e-41 171.4 125 75.2
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 6.0e-41 171.0 131 69.5
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 7.8e-41 170.6 122 72.1
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 7.8e-41 170.6 117 74.4
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 7.8e-41 170.6 131 70.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 1.0e-40 170.2 121 74.4
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.0e-40 170.2 131 73.3
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.3e-40 169.9 119 72.3
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 119 75.6
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.7e-40 169.5 120 77.5
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.3e-40 169.1 119 77.3
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.0e-40 168.7 119 70.6
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.0e-40 168.7 131 72.5
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.0e-40 168.7 130 67.7
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.9e-40 168.3 129 72.9
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.9e-40 168.3 117 77.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.1e-40 167.9 120 71.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.1e-40 167.9 132 70.5
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 5.1e-40 167.9 131 70.2
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.6e-40 167.5 132 71.2
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.6e-40 167.5 119 74.8
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 8.7e-40 167.2 131 68.7
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.3e-39 165.2 130 66.9
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 4.3e-39 164.9 132 67.4
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.6e-39 164.5 123 75.6
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 9.6e-39 163.7 111 75.7
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 9.6e-39 163.7 105 82.9
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.6e-38 162.9 131 70.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.6e-38 162.9 117 75.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.1e-38 162.5 130 67.7
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.6e-38 161.8 129 68.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 8.1e-38 160.6 132 68.2
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-37 160.2 129 68.2
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-37 160.2 129 68.2
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.1e-37 160.2 104 81.7
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.4e-37 159.8 132 70.5
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.4e-37 159.8 111 75.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.8e-37 159.5 118 71.2
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.1e-37 158.7 129 69.8
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.3e-37 157.9 132 67.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.3e-37 157.9 132 67.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 6.9e-37 157.5 111 74.8
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 9.0e-37 157.1 99 83.8
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.0e-36 156.0 134 64.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.4e-36 155.2 124 71.0
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 5.8e-36 154.5 111 72.1
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 7.6e-36 154.1 115 72.2
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.3e-35 153.3 83 86.7
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.3e-35 153.3 111 72.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.3e-35 153.3 116 69.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.2e-35 152.5 115 70.4
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.9e-35 152.1 99 81.8
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 3.8e-35 151.8 111 71.2
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 4.9e-35 151.4 128 62.5
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.4e-34 149.1 121 67.8
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.6e-33 146.4 131 65.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 6.6e-32 141.0 109 68.8
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.5e-31 139.0 120 66.7
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.8e-30 134.8 120 65.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 8.1e-30 134.0 84 78.6
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.4e-29 133.3 109 67.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.5e-28 129.8 133 55.6
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.6e-28 129.0 113 62.8
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.4e-26 122.5 78 78.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-25 119.8 69 87.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 2.1e-25 119.4 121 56.2
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.0e-24 117.1 129 56.6
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.7e-24 114.0 87 66.7
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 3.3e-23 112.1 98 62.2
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.6e-22 109.8 126 55.6
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.8e-22 109.0 99 66.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.1e-22 107.5 69 78.3
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.4e-21 105.9 132 53.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.6e-20 102.4 84 65.5
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 3.2e-18 95.5 93 57.0
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.2e-18 95.5 106 55.7
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.6e-17 93.2 92 57.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.6e-17 91.7 46 100.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.0e-16 89.0 71 62.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.5e-15 85.9 67 59.7
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.1e-13 80.5 65 58.5
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.7e-06 55.5 33 75.8


User provided reference genes

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