Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 5.3e-237 823.9 408 100.0
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 3.5e-188 661.8 408 83.6
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 3.0e-187 658.7 409 84.4
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 2.1e-185 652.5 421 82.2
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.2e-182 642.5 415 82.7
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.2e-182 642.5 415 82.7
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.4e-181 639.8 415 82.4
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 4.1e-173 611.7 409 77.8
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.6e-172 609.8 410 77.1
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 3.9e-171 605.1 413 79.2
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.6e-167 592.4 405 76.5
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.2e-166 589.3 411 74.7
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.3e-139 499.6 437 63.4
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.9e-133 479.9 369 66.1
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.2e-133 479.2 385 65.5
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.1e-132 476.5 384 64.6
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 2.7e-132 476.1 357 68.1
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 2.3e-131 473.0 326 71.5
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.3e-131 473.0 331 68.6
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 6.7e-131 471.5 313 77.0
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.1e-130 470.7 363 65.3
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.5e-130 470.3 375 66.1
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 2.5e-130 469.5 360 65.8
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 9.7e-130 467.6 372 63.4
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.2e-129 466.5 401 61.3
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 2.0e-127 459.9 353 66.9
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 7.7e-127 458.0 332 69.6
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.7e-126 456.8 354 68.1
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 3.8e-126 455.7 357 64.1
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 3.8e-126 455.7 340 67.9
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.4e-125 453.8 323 69.0
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.4e-125 453.8 316 71.8
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.9e-125 453.4 332 68.1
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.2e-125 452.2 369 61.8
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 5.5e-125 451.8 354 64.4
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 9.4e-125 451.1 361 62.3
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.6e-124 450.3 323 69.3
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 2.1e-124 449.9 368 63.3
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 8.8e-123 444.5 314 70.1
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 8.8e-123 444.5 327 68.5
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.1e-122 444.1 369 63.1
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 7.4e-122 441.4 327 69.1
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.3e-121 440.7 331 68.3
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 2.8e-121 439.5 368 61.7
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 5.3e-120 435.3 336 66.7
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 9.1e-120 434.5 252 79.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-119 433.3 317 65.3
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 3.4e-119 432.6 316 68.4
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.4e-119 432.6 321 68.5
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 4.5e-119 432.2 321 64.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.5e-119 432.2 313 65.5
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.3e-118 430.6 338 65.1
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 2.2e-118 429.9 339 64.0
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.9e-118 429.5 359 63.0
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.9e-118 429.5 339 65.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.8e-118 429.1 315 64.8
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.1e-117 427.6 319 66.8
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.1e-117 427.6 319 66.8
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.1e-117 427.6 343 63.0
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.4e-117 427.2 359 61.8
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.2e-117 425.6 339 64.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 5.5e-117 425.2 318 67.3
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 4.7e-116 422.2 325 65.2
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 4.7e-116 422.2 321 67.9
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 6.1e-116 421.8 330 64.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.9e-116 421.4 307 65.8
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 7.9e-116 421.4 365 58.9
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.4e-115 420.6 346 62.4
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 3.0e-115 419.5 313 66.5
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 2.6e-114 416.4 316 64.2
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.3e-114 416.0 340 63.5
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 2.2e-113 413.3 329 64.7
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.7e-113 412.5 306 68.0
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 6.3e-113 411.8 358 58.4
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.8e-112 410.2 315 65.1
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.2e-111 407.5 323 66.3
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.0e-111 406.8 246 78.0
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.5e-111 405.6 322 63.0
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 7.7e-111 404.8 364 59.9
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 7.7e-111 404.8 320 62.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.2e-108 397.5 392 56.4
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.0e-107 394.4 325 63.7
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.0e-107 394.4 336 60.7
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.0e-107 392.9 312 62.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 4.1e-104 382.5 337 56.1
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.0e-102 377.9 347 57.6
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.2e-98 364.4 329 54.7
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.4e-98 362.8 306 62.7
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.2e-97 360.1 314 61.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 2.8e-97 359.8 344 57.3
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.6e-95 354.0 327 58.4
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.1e-93 347.8 230 69.1
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.1e-93 347.8 225 74.7
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 4.7e-92 342.4 192 80.2
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 1.3e-86 324.3 340 51.2
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 9.5e-85 318.2 332 52.4
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 5.2e-83 312.4 249 62.2
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.2e-82 311.2 193 75.1
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.7e-81 306.2 282 55.0
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 7.8e-79 298.5 277 53.1
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 4.4e-74 282.7 291 47.4
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 4.4e-74 282.7 303 48.8
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.7e-70 270.8 196 62.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 5.0e-70 269.2 389 45.5
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.1e-64 251.5 230 51.3
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.7e-57 227.6 125 77.6
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 2.4e-56 223.8 123 80.5
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.9e-53 214.2 288 46.5
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.4e-48 198.0 223 51.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 5.4e-48 196.1 114 80.7
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 3.3e-45 186.8 112 77.7
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 2.8e-44 183.7 175 54.3
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 2.2e-41 174.1 186 53.8
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.1e-38 162.9 173 53.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.1e-37 161.8 270 39.3
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.6e-37 159.5 99 75.8
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.8e-34 149.4 173 50.9
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 8.4e-33 145.6 198 38.4
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.4e-27 128.3 62 88.7
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 5.5e-24 116.3 302 27.5
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 5.5e-24 116.3 73 75.3
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.0e-22 110.5 98 60.2
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.1e-21 108.6 56 78.6
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 4.1e-19 100.1 61 78.7
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.0e-17 95.5 63 71.4
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.8e-17 93.6 78 57.7
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 8.4e-17 92.4 194 35.1
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.7e-15 87.4 148 41.2
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.5e-15 87.0 196 37.2
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.0e-14 85.5 138 43.5
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 9.7e-13 79.0 156 35.9
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.5e-10 71.6 59 64.4
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 2.6e-10 70.9 109 38.5
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 3.8e-09 67.0 40 80.0
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.4e-08 65.1 40 77.5
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 2.7e-07 60.8 149 35.6


User provided reference genes

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