Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g23200 Schrenkiella parvula HOM05D006836 ORTHO05D008691 3.2e-192 674.9 325 100.0
BcaC06g35865 Brassica carinata HOM05D006836 ORTHO05D008691 7.9e-167 590.5 325 87.7
BolC7t41479H Brassica oleracea HOM05D006836 ORTHO05D008691 7.9e-167 590.5 325 87.7
C07p10290 Brassica napus HOM05D006836 ORTHO05D008691 6.7e-166 587.4 325 87.1
BcaB06g26781 Brassica carinata HOM05D006836 ORTHO05D008691 1.3e-164 583.2 322 87.3
Thhalv10002607m.g Eutrema salsugineum HOM05D006836 ORTHO05D008691 6.9e-163 577.4 327 86.9
BraA07t28465Z Brassica rapa HOM05D006836 ORTHO05D008691 1.0e-161 573.5 325 85.5
A07p06710 Brassica napus HOM05D006836 ORTHO05D008691 3.2e-160 568.5 325 84.9
CARHR102220 Cardamine hirsuta HOM05D006836 ORTHO05D008691 1.3e-158 563.1 330 84.2
AL3G42030 Arabidopsis lyrata HOM05D006836 ORTHO05D008691 3.4e-154 548.5 331 84.0
Carub.0003s2604 Capsella rubella HOM05D006836 ORTHO05D008691 2.2e-153 545.8 333 81.4
THA.LOC104808842 Tarenaya hassleriana HOM05D006836 ORTHO05D008691 2.7e-122 442.6 337 65.9
AT2G04360 Arabidopsis thaliana HOM05D006836 ORTHO05D008691 1.4e-110 403.7 271 77.5
Thecc.01G198300 Theobroma cacao HOM05D006836 ORTHO05D008691 3.0e-110 402.5 337 59.6
Manes.13G060700 Manihot esculenta HOM05D006836 ORTHO05D008691 5.7e-109 398.3 339 60.5
Gohir.A07G192900 Gossypium hirsutum HOM05D006836 ORTHO05D008691 9.8e-109 397.5 337 58.8
GSVIVG01030118001 Vitis vinifera HOM05D006836 ORTHO05D008691 6.3e-108 394.8 341 58.4
Gorai.001G223100 Gossypium raimondii HOM05D006836 ORTHO05D008691 1.4e-107 393.7 337 57.6
Gohir.D07G199300 Gossypium hirsutum HOM05D006836 ORTHO05D008691 2.4e-107 392.9 337 57.6
Duzib133G0147 Durio zibethinus HOM05D006836 ORTHO05D008691 4.1e-107 392.1 337 57.6
Lj6g0007987 Lotus japonicus HOM05D006836 ORTHO05D008691 2.0e-106 389.8 333 58.6
QL04p067653 Quercus lobata HOM05D006836 ORTHO05D008691 2.0e-106 389.8 347 56.5
CiPaw.03G283000 Carya illinoinensis HOM05D006836 ORTHO05D008691 3.5e-106 389.0 352 54.5
Cfa014210 Carpinus fangiana HOM05D006836 ORTHO05D008691 1.5e-104 383.6 356 56.7
Lalb_Chr10g0094621 Lupinus albus HOM05D006836 ORTHO05D008691 4.3e-104 382.1 336 56.2
RcHm_v2.0_Chr2g0155731 Rosa chinensis HOM05D006836 ORTHO05D008691 7.3e-104 381.3 342 56.1
CANSAT64G2876 Cannabis sativa HOM05D006836 ORTHO05D008691 4.7e-103 378.6 335 59.1
CSS0020520 Camellia sinensis var. sinensis HOM05D006836 ORTHO05D008691 8.0e-103 377.9 350 54.6
Rhsim06G0178100 Rhododendron simsii HOM05D006836 ORTHO05D008691 4.0e-102 375.6 344 54.1
Dinv21313 Davidia involucrata HOM05D006836 ORTHO05D008691 6.8e-102 374.8 336 54.8
Actinidia09801 Actinidia chinensis HOM05D006836 ORTHO05D008691 7.5e-101 371.3 338 55.9
Ciclev10015848m.g Citrus clementina HOM05D006836 ORTHO05D008691 9.8e-101 370.9 326 57.4
Potri.014G169200 Populus trichocarpa HOM05D006836 ORTHO05D008691 3.7e-100 369.0 338 56.2
Nitab4.5_0004852g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 4.9e-100 368.6 345 54.8
MD09G1129600 Malus domestica HOM05D006836 ORTHO05D008691 8.3e-100 367.9 330 54.5
Ca_16339_v3 Cicer arietinum L. HOM05D006836 ORTHO05D008691 1.1e-99 367.5 330 55.2
arahy.Tifrunner.gnm1.ann1.GSTV0Y Arachis hypogaea HOM05D006836 ORTHO05D008691 1.4e-99 367.1 337 55.5
TPR.G16170 Trifolium pratense HOM05D006836 ORTHO05D008691 1.4e-99 367.1 324 56.2
arahy.Tifrunner.gnm1.ann1.M09JG2 Arachis hypogaea HOM05D006836 ORTHO05D008691 2.4e-99 366.3 340 54.7
vmacro12068 Vaccinium macrocarpon HOM05D006836 ORTHO05D008691 2.4e-99 366.3 345 53.6
PGR031G1777 Punica granatum HOM05D006836 ORTHO05D008691 4.1e-99 365.5 340 55.3
TWI75G1319 Tripterygium wilfordii HOM05D006836 ORTHO05D008691 4.1e-99 365.5 337 56.7
TAR629G0496 Trochodendron aralioides HOM05D006836 ORTHO05D008691 5.4e-99 365.2 349 52.4
Phvul.L001691 Phaseolus vulgaris HOM05D006836 ORTHO05D008691 1.6e-98 363.6 282 61.7
VMungo0647G0281 Vigna mungo HOM05D006836 ORTHO05D008691 3.5e-98 362.5 266 64.3
Eucgr.K01397 Eucalyptus grandis HOM05D006836 ORTHO05D008691 1.3e-97 360.5 332 55.4
Aa31sc202G50 Aethionema arabicum HOM05D006836 ORTHO05D008691 3.9e-97 359.0 283 65.7
Haze_12601 Corylus avellana HOM05D006836 ORTHO05D008691 8.6e-97 357.8 398 50.3
DCAR_012739 Daucus carota HOM05D006836 ORTHO05D008691 1.5e-96 357.1 332 54.5
Glyma.13G010200 Glycine max HOM05D006836 ORTHO05D008691 1.5e-96 357.1 325 55.4
PSO541G5262 Papaver somniferum HOM05D006836 ORTHO05D008691 1.9e-96 356.7 356 52.2
Solyc07g045300.4 Solanum lycopersicum HOM05D006836 ORTHO05D008691 1.9e-96 356.7 342 53.8
ClCG02G009110 Citrullus lanatus HOM05D006836 ORTHO05D008691 4.3e-96 355.5 238 67.6
Nn1g07540 Nelumbo nucifera HOM05D006836 ORTHO05D008691 7.3e-96 354.8 345 52.8
Hund15463 Selenicereus undatus HOM05D006836 ORTHO05D008691 2.1e-95 353.2 329 55.3
Aqoxy1G03080 Aquilegia oxysepala HOM05D006836 ORTHO05D008691 3.6e-95 352.4 264 63.3
PSO675G1370 Papaver somniferum HOM05D006836 ORTHO05D008691 4.7e-95 352.1 354 52.0
MBI14_g24036_MAGBIO Magnolia biondii HOM05D006836 ORTHO05D008691 1.8e-94 350.1 330 53.3
Psat5g104760 Pisum sativum HOM05D006836 ORTHO05D008691 2.3e-94 349.7 319 53.9
Glyma.20G060000 Glycine max HOM05D006836 ORTHO05D008691 1.2e-93 347.4 262 62.6
Sopen07g023830 Solanum pennellii HOM05D006836 ORTHO05D008691 2.0e-93 346.7 235 66.8
Sed0023251 Sechium edule HOM05D006836 ORTHO05D008691 1.3e-92 344.0 335 52.2
COL.COLO4_19642 Corchorus olitorius HOM05D006836 ORTHO05D008691 2.9e-92 342.8 339 54.3
PGSC0003DMG400017381 Solanum tuberosum HOM05D006836 ORTHO05D008691 4.9e-92 342.0 235 66.0
Oeu037218.2 Olea europaea HOM05D000879 ORTHO05D008691 8.3e-92 341.3 238 65.1
Medtr3g082680 Medicago truncatula HOM05D006836 ORTHO05D008691 3.5e-90 335.9 230 66.1
Migut.M00056 Erythranthe guttata HOM05D006836 ORTHO05D008691 6.0e-90 335.1 347 53.0
SGA_v2.0_scaffold73G24492 Striga asiatica HOM05D006836 ORTHO05D008691 3.9e-89 332.4 343 49.9
Sabra14G0129000 Salix brachista HOM05D006836 ORTHO05D008691 5.0e-89 332.0 426 45.1
Os08g0345400 Oryza sativa ssp. japonica HOM05D006836 ORTHO05D008691 6.6e-89 331.6 239 64.0
Nitab4.5_0005354g0030 Nicotiana tabacum HOM05D006836 ORTHO05D008691 2.5e-88 329.7 342 51.2
MSTRG.14912 Avicennia marina HOM05D006836 ORTHO05D008691 9.5e-88 327.8 349 48.7
Zm00001eb176810 Zea mays HOM05D006836 ORTHO05D008691 9.5e-88 327.8 342 49.7
SEGI_40154 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 1.6e-87 327.0 256 58.6
FvH4_6g40480 Fragaria vesca HOM05D006836 ORTHO05D008691 2.1e-87 326.6 295 56.3
EL10Ac9g22661 Beta vulgaris HOM05D006836 ORTHO05D008691 6.2e-87 325.1 340 50.9
AUR62014994 Chenopodium quinoa HOM05D006836 ORTHO05D008691 6.8e-86 321.6 236 64.4
FAN10G4054 Fragaria x ananassa HOM05D006836 ORTHO05D008691 9.8e-85 317.8 358 48.9
FAN14G0130 Fragaria x ananassa HOM05D006836 ORTHO05D008691 9.8e-85 317.8 358 48.9
Ah.01g002500 Amaranthus hybridus HOM05D006836 ORTHO05D008691 1.3e-84 317.4 337 52.2
ATR0751G245 Amborella trichopoda HOM05D006836 ORTHO05D008691 2.1e-82 310.1 211 66.4
Lsat_1_v5_gn_7_97361 Lactuca sativa HOM05D006836 ORTHO05D008691 2.3e-81 306.6 341 45.7
Cc00_g01020 Coffea canephora HOM05D006836 ORTHO05D008691 5.6e-80 302.0 223 59.6
AUR62029127 Chenopodium quinoa HOM05D006836 ORTHO05D008691 1.4e-78 297.4 222 64.4
Peaxi162Scf00612g00142 Petunia axillaris HOM05D006836 ORTHO05D008691 1.3e-76 290.8 359 44.8
Lj8A137G50 Lonicera japonica HOM05D006836 ORTHO05D008691 1.7e-76 290.4 205 67.3
HanXRQChr11g0329431 Helianthus annuus HOM05D006836 ORTHO05D008691 5.4e-75 285.4 322 47.2
CsaV3_6G009720 Cucumis sativus L. HOM05D006836 ORTHO05D008691 6.0e-74 282.0 241 56.4
unitig_62.g23534 Utricularia gibba HOM05D000211 ORTHO05D002682 6.0e-74 282.0 319 48.6
Cpa.g.sc136.39 Carica papaya HOM05D006836 ORTHO05D008691 1.2e-71 274.2 344 46.2
Pp3c23_16310 Physcomitrium patens HOM05D006836 ORTHO05D008691 3.1e-70 269.6 225 55.6
ECA236G0162 Erigeron canadensis HOM05D006836 ORTHO05D008691 6.9e-70 268.5 199 61.8
CDE10G1136 Ceratophyllum demersum HOM05D006836 ORTHO05D008691 2.6e-69 266.5 174 70.7
MELO3C025942.2 Cucumis melo HOM05D006836 ORTHO05D008691 7.8e-66 255.0 280 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1494 Anthoceros agrestis HOM05D006836 ORTHO05D008691 1.9e-64 250.4 229 52.4
Sc21g0000470 Simmondsia chinensis HOM05D006836 ORTHO05D008691 2.5e-64 250.0 271 49.1
Mapoly0098s0007 Marchantia polymorpha HOM05D006836 ORTHO05D008691 7.3e-64 248.4 221 53.8
SMO270G0068 Selaginella moellendorffii HOM05D006836 ORTHO05D008691 3.1e-62 243.0 224 49.6
Prupe.3G195700 Prunus persica HOM05D006836 ORTHO05D008691 7.6e-61 238.4 244 52.5
FAN02G3194 Fragaria x ananassa HOM05D006836 ORTHO05D008691 3.5e-58 229.6 240 51.2
Haze_12612 Corylus avellana HOM05D006836 ORTHO05D008691 2.3e-57 226.9 265 47.9
MD17G1118400 Malus domestica HOM05D006836 ORTHO05D008691 1.9e-56 223.8 229 50.2
MD07G1016400 Malus domestica HOM05D006836 ORTHO05D008691 5.6e-56 222.2 225 50.7
Cre05.g234750 Chlamydomonas reinhardtii HOM05D006836 ORTHO05D008691 1.6e-47 194.1 305 38.4
CBR_g3513 Chara braunii HOM05D006836 ORTHO05D000407 5.0e-36 156.0 199 40.7
FAN05G5431 Fragaria x ananassa HOM05D006836 ORTHO05D008691 5.0e-36 156.0 116 64.7
FAN09G0369 Fragaria x ananassa HOM05D006836 ORTHO05D008691 9.3e-35 151.8 116 63.8
SEGI_21977 Sequoiadendron giganteum HOM05D006836 ORTHO05D008691 2.2e-31 140.6 110 58.2
HPP92_003030 Vanilla planifolia HOM05D006836 ORTHO05D008691 7.7e-29 132.1 94 61.7
HPP92_003031 Vanilla planifolia HOM05D006836 ORTHO05D008691 1.3e-28 131.3 97 60.8
PRCOL_00003549 Prasinoderma coloniale HOM05D006836 ORTHO05D008691 2.2e-20 104.0 167 42.5
arahy.Tifrunner.gnm1.ann1.FY93PX Arachis hypogaea HOM05D006836 ORTHO05D000230 2.5e-11 73.9 47 66.0
MCO08G347 Micromonas commoda HOM05D006836 ORTHO05D008691 5.5e-11 72.8 218 30.7
Haze_12595 Corylus avellana HOM05D006836 ORTHO05D008691 2.3e-09 67.4 35 80.0
Oeu037217.1 Olea europaea HOM05D006836 ORTHO05D049434 1.4e-06 58.2 144 29.9
Oeu037216.1 Olea europaea HOM05D006836 ORTHO05D049434 1.8e-06 57.8 144 29.9
Hma1.2p1_0599F.1_g187040 Hydrangea macrophylla HOM05D006836 ORTHO05D008691 4.1e-06 56.6 133 33.8


User provided reference genes

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