Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 1.4e-102 376.3 191 100.0
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 1.1e-86 323.6 191 83.8
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.8e-86 322.8 191 83.8
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 2.0e-85 319.3 192 83.9
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 3.4e-85 318.5 191 83.2
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 4.4e-85 318.2 192 83.3
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.5e-77 293.1 191 79.1
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 1.7e-76 289.7 191 78.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.7e-76 289.7 191 77.5
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 2.7e-74 282.3 189 75.7
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 6.0e-74 281.2 192 74.0
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 8.1e-71 270.8 189 73.0
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 3.5e-66 255.4 195 66.2
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 3.5e-66 255.4 197 67.5
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 9.0e-62 240.7 191 67.5
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.5e-61 240.0 191 67.0
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.0e-61 239.6 191 67.0
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.0e-61 239.6 191 67.0
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 3.4e-61 238.8 191 67.0
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.3e-60 236.9 191 67.0
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.1e-56 223.8 179 64.2
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 3.3e-48 195.7 170 59.4
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 3.7e-47 192.2 164 58.5
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.8e-46 189.9 176 58.0
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.1e-46 189.1 192 57.3
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 2.6e-45 186.0 165 58.2
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 5.9e-45 184.9 169 58.0
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.7e-44 183.3 170 56.5
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 2.9e-44 182.6 163 58.9
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 6.5e-44 181.4 168 56.0
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 6.5e-44 181.4 173 54.3
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 1.9e-43 179.9 168 54.2
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 3.2e-43 179.1 168 54.8
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 4.2e-43 178.7 206 49.0
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 5.5e-43 178.3 170 57.1
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 7.2e-43 177.9 195 50.8
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 1.6e-42 176.8 187 53.5
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.6e-42 176.8 207 49.8
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 1.6e-42 176.8 203 51.2
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.1e-42 176.4 187 53.5
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 2.7e-42 176.0 188 53.7
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 2.7e-42 176.0 166 56.6
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 3.6e-42 175.6 189 51.3
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 6.1e-42 174.9 180 54.4
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 6.1e-42 174.9 177 52.5
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.9e-42 174.5 170 57.1
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.0e-41 174.1 187 52.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 1.3e-41 173.7 197 51.3
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 1.3e-41 173.7 168 56.5
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 1.8e-41 173.3 199 49.2
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.8e-41 173.3 187 52.4
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 3.0e-41 172.6 192 52.1
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 3.0e-41 172.6 187 50.8
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 5.1e-41 171.8 184 50.0
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 6.7e-41 171.4 176 52.8
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 6.7e-41 171.4 178 52.2
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 8.7e-41 171.0 170 54.7
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.9e-40 169.9 167 53.9
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 2.5e-40 169.5 167 55.1
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 3.3e-40 169.1 176 55.1
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.3e-40 168.7 167 53.3
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 4.3e-40 168.7 167 55.1
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 5.7e-40 168.3 175 51.4
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 7.4e-40 167.9 172 53.5
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 9.7e-40 167.5 166 53.0
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 9.7e-40 167.5 167 54.5
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 1.6e-39 166.8 175 53.7
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.6e-39 166.8 166 55.4
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 2.2e-39 166.4 175 50.3
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 3.7e-39 165.6 206 47.1
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 8.2e-39 164.5 204 47.1
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 1.4e-38 163.7 154 57.1
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 1.4e-38 163.7 199 49.2
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.8e-38 163.3 205 46.3
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 4.1e-38 162.2 205 45.9
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 9.1e-38 161.0 205 45.9
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 9.1e-38 161.0 206 46.6
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.2e-37 160.6 173 49.7
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.2e-37 160.6 199 45.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.2e-37 160.6 205 45.9
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.5e-37 160.2 181 47.5
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 2.6e-37 159.5 173 51.4
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 3.4e-37 159.1 176 52.3
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.7e-37 157.9 209 45.5
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 1.0e-36 157.5 181 48.1
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.0e-36 157.5 173 49.7
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.7e-36 156.8 224 43.8
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 2.2e-36 156.4 178 48.9
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 2.2e-36 156.4 186 47.8
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 5.0e-36 155.2 223 43.0
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 6.5e-36 154.8 197 47.2
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.4e-35 153.7 186 46.2
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 4.2e-35 152.1 176 48.9
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 4.2e-35 152.1 190 48.4
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 4.2e-35 152.1 173 46.8
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 9.4e-35 151.0 170 50.6
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 2.1e-34 149.8 176 46.6
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 2.7e-34 149.4 177 48.0
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 4.6e-34 148.7 195 44.1
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 2.6e-32 142.9 172 47.7
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 7.4e-32 141.4 158 48.7
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 1.7e-31 140.2 177 46.3
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.2e-31 139.8 163 45.4
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 4.8e-31 138.7 176 42.0
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 5.3e-30 135.2 171 45.0
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 7.4e-24 114.8 96 62.5
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 4.8e-23 112.1 181 37.6
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.2e-21 107.5 117 50.4
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 2.9e-20 102.8 125 48.0
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 1.1e-19 100.9 83 60.2
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.4e-17 94.0 183 35.5
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 6.3e-15 85.1 168 34.5
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 2.2e-12 76.6 173 30.1
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 3.6e-10 69.3 99 47.5
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 6.1e-10 68.6 105 38.1
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 2.2e-07 60.1 176 27.3


User provided reference genes

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