Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 0.0e+00 1149.0 601 100.0
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1097.0 601 94.3
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1097.0 601 94.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1094.3 602 95.5
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 0.0e+00 1078.5 601 93.7
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.1e-312 1074.3 604 93.9
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 8.2e-312 1073.2 601 93.5
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.2e-311 1072.4 602 93.5
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 3.1e-310 1067.8 601 93.3
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 9.0e-310 1066.2 602 92.7
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 9.0e-310 1066.2 602 92.7
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 9.0e-310 1066.2 602 92.7
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 2.0e-309 1065.1 604 93.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.7e-306 1054.7 601 91.2
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 7.9e-306 1053.1 601 91.2
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.4e-305 1052.4 604 91.2
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-302 1042.7 606 88.4
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 8.8e-297 1023.1 603 88.4
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.8e-294 1015.4 608 86.8
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-287 992.3 552 91.1
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.2e-283 978.0 552 92.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 4.0e-273 944.5 607 80.2
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 8.3e-263 910.2 601 78.4
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 4.1e-262 907.9 601 78.9
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.2e-261 906.4 601 76.7
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 5.9e-261 904.0 602 77.1
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.0e-260 903.3 606 76.2
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.3e-260 902.1 601 78.0
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 3.0e-260 901.7 601 78.2
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.9e-260 901.4 605 76.5
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 8.6e-260 900.2 601 76.2
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.1e-259 899.8 593 78.4
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.1e-259 899.8 606 78.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.1e-259 899.8 600 78.0
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 5.6e-259 897.5 606 77.1
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.2e-258 896.3 604 77.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.6e-258 894.8 601 75.2
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.7e-258 894.4 601 75.2
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 6.2e-258 894.0 606 75.7
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 6.2e-258 894.0 605 77.4
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.0e-257 893.3 601 77.9
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.8e-257 892.5 606 75.9
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.3e-257 892.1 601 77.7
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.6e-256 888.6 601 75.2
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 2.6e-256 888.6 603 76.9
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.4e-256 887.9 603 76.6
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 9.8e-256 886.7 600 77.5
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-255 886.3 606 75.1
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.2e-255 885.6 600 77.2
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 2.9e-255 885.2 610 75.1
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 1.2e-253 879.8 605 76.4
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 3.5e-253 878.2 603 77.1
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 3.0e-252 875.2 602 75.2
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 1.1e-251 873.2 600 76.0
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-251 873.2 603 75.3
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.9e-251 872.5 601 74.2
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 5.6e-251 870.9 602 74.3
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 2.1e-250 869.0 602 74.4
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.1e-250 869.0 602 74.6
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.6e-250 868.2 602 74.1
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.7e-250 867.8 602 74.3
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.6e-248 862.1 601 75.9
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.4e-248 861.3 613 70.6
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 9.8e-248 860.1 613 70.6
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.3e-247 859.8 599 73.8
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.7e-247 858.2 616 73.4
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.7e-247 858.2 606 74.3
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.9e-247 857.8 606 73.3
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.4e-246 856.3 600 74.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.4e-246 856.3 600 74.8
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 4.1e-246 854.7 605 74.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.4e-246 854.4 603 74.5
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 1.6e-245 852.8 605 74.5
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.7e-245 852.0 603 74.0
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 7.8e-245 850.5 601 74.0
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.3e-244 849.7 601 73.2
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.7e-244 849.4 600 72.8
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.7e-244 849.4 602 73.6
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.9e-244 848.2 605 72.6
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.9e-244 848.2 605 73.1
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.1e-243 846.7 605 73.1
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.8e-241 839.3 607 73.3
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-240 835.9 600 72.5
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 9.9e-240 833.6 601 72.9
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.3e-239 833.2 607 72.7
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.1e-238 830.1 606 72.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 7.1e-238 827.4 600 72.7
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.6e-237 826.2 600 72.2
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.6e-237 826.2 599 71.5
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 7.8e-237 823.9 610 69.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.7e-236 822.8 594 72.7
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.0e-236 822.0 616 71.9
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 3.0e-236 822.0 616 70.0
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 5.1e-236 821.2 601 71.7
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 5.6e-235 817.8 600 71.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.6e-234 816.2 600 71.2
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.2e-232 810.1 600 70.7
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 3.2e-230 802.0 600 70.5
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 9.3e-230 800.4 605 69.3
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 7.8e-229 797.3 601 68.6
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.0e-228 797.0 601 69.9
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 3.0e-228 795.4 606 69.3
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.5e-227 793.1 605 68.8
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.1e-225 786.9 600 70.7
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 5.3e-225 784.6 498 86.3
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 9.0e-225 783.9 601 69.2
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-223 779.2 601 68.4
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.7e-221 772.3 601 66.1
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.0e-221 771.2 611 68.4
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.3e-220 769.2 645 65.0
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 3.9e-220 768.5 613 68.4
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.5e-219 766.5 611 68.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.8e-218 761.5 611 66.8
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 8.7e-212 740.7 619 65.1
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.4e-209 733.4 534 72.8
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.8e-209 733.0 601 65.9
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 4.2e-206 721.8 604 65.9
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.1e-205 719.5 600 65.3
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 8.2e-202 707.6 601 64.9
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-199 700.3 579 64.4
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.2e-198 694.5 474 75.9
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.1e-173 611.7 606 57.3
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.0e-156 557.8 611 52.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.8e-156 555.1 522 61.1
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 7.5e-155 551.6 603 50.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 7.8e-144 515.0 605 50.9
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 3.0e-135 486.5 620 44.0
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 8.3e-130 468.4 602 48.7
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.4e-129 466.8 593 46.4
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.0e-87 328.6 209 76.6
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.8e-85 320.5 243 65.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.3e-82 311.6 333 53.2
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.0e-75 287.7 625 33.8
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.7e-61 241.5 241 61.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.7e-61 240.4 272 52.9
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 4.8e-61 240.0 601 30.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 6.5e-50 203.0 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.1e-48 198.0 151 70.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 3.3e-33 147.5 79 91.1
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 9.5e-33 146.0 631 24.2
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-32 144.4 79 89.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.1e-31 141.0 201 43.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.2e-30 139.0 98 65.3
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.4e-20 104.8 79 63.3
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 8.1e-16 89.7 114 43.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 3.1e-15 87.8 217 41.9
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.9e-12 78.6 90 46.7
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.1e-10 70.5 55 63.6


User provided reference genes

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