Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 8.4e-143 510.4 264 100.0
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 2.9e-87 325.9 256 71.5
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 9.4e-86 320.9 268 70.5
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 1.6e-85 320.1 256 71.5
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 2.1e-85 319.7 260 70.4
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 2.1e-85 319.7 260 70.4
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 2.7e-85 319.3 260 71.5
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 4.7e-85 318.5 260 70.0
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 2.6e-83 312.8 265 68.7
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.6e-80 303.5 258 68.6
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.1e-60 237.7 161 81.4
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 1.4e-57 227.3 255 54.1
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 5.6e-22 109.0 285 35.4
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 3.1e-20 103.2 178 43.3
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.6e-19 100.1 277 33.2
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.7e-18 97.4 277 32.1
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.7e-18 97.4 276 32.6
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 2.2e-18 97.1 209 37.8
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 2.9e-18 96.7 278 33.5
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 3.8e-18 96.3 213 36.2
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 6.5e-18 95.5 282 33.3
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 8.4e-18 95.1 272 34.6
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 1.1e-17 94.7 288 34.0
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 1.9e-17 94.0 287 32.8
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 5.5e-17 92.4 237 35.4
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 9.3e-17 91.7 277 32.1
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 1.6e-16 90.9 271 31.0
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.6e-16 90.9 283 33.2
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.1e-16 90.5 266 32.0
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 2.7e-16 90.1 280 31.8
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.6e-16 89.4 283 28.3
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 4.6e-16 89.4 270 31.9
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.0e-15 88.2 300 31.7
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 1.3e-15 87.8 275 30.2
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.3e-15 87.8 266 30.8
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.8e-15 87.4 276 32.6
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 3.0e-15 86.7 285 30.2
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.0e-15 86.7 276 30.4
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 5.1e-15 85.9 275 30.2
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 6.7e-15 85.5 278 28.4
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.1e-14 84.7 290 33.1
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 1.9e-14 84.0 285 31.2
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 4.3e-14 82.8 206 34.0
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 5.7e-14 82.4 194 38.1
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 5.7e-14 82.4 231 34.6
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 7.4e-14 82.0 254 30.3
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 7.4e-14 82.0 254 30.3
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 1.3e-13 81.3 285 32.3
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 1.6e-13 80.9 295 32.9
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.6e-13 80.9 276 29.0
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 1.4e-12 77.8 315 28.9
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.8e-12 77.4 219 35.2
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 2.4e-12 77.0 274 28.1
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 2.4e-12 77.0 294 30.6
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 3.1e-12 76.6 285 29.8
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 4.1e-12 76.3 223 34.1
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 4.1e-12 76.3 280 30.4
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 5.3e-12 75.9 148 37.2
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 1.2e-11 74.7 282 29.8
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 1.2e-11 74.7 271 28.4
Aa31LG8G11910 Aethionema arabicum HOM05D011699 ORTHO05D008062 2.0e-11 73.9 88 52.3
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 2.6e-11 73.6 199 33.2
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 4.5e-11 72.8 136 40.4
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 7.6e-11 72.0 285 29.5
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 7.6e-11 72.0 135 36.3
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 2.9e-10 70.1 167 37.7
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 2.9e-10 70.1 275 27.3
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 3.8e-10 69.7 179 35.2
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 3.8e-10 69.7 133 39.8
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 3.8e-10 69.7 294 27.6
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 5.0e-10 69.3 178 33.7
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 5.0e-10 69.3 239 29.3
Aa31LG8G11900 Aethionema arabicum HOM05D011699 ORTHO05D008062 8.5e-10 68.6 79 57.0
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 8.5e-10 68.6 138 39.9
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.4e-09 67.8 309 25.6
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.9e-09 67.4 111 42.3
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 4.2e-09 66.2 298 26.8
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 7.2e-09 65.5 245 32.7
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 9.3e-09 65.1 269 29.0
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 1.6e-08 64.3 220 31.8
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 1.6e-08 64.3 116 38.8
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.3e-07 61.2 305 29.2
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 1.8e-07 60.8 124 39.5
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 2.3e-07 60.5 264 27.7
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 3.9e-07 59.7 193 32.6
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 6.7e-07 58.9 131 40.5
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 6.7e-07 58.9 212 31.1
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.5e-06 57.8 191 27.7
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.5e-06 57.8 112 40.2
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 1.5e-06 57.8 144 33.3
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 1.9e-06 57.4 213 29.6
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.9e-06 57.4 120 41.7
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.5e-06 57.0 198 28.8
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 4.3e-06 56.2 213 29.6
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 4.3e-06 56.2 216 31.0


User provided reference genes

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