Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.0e-153 545.8 292 100.0
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 4.2e-143 511.5 292 93.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 1.2e-142 510.0 292 93.2
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.3e-141 506.5 292 93.2
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 3.0e-141 505.4 293 92.8
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.7e-141 504.2 293 92.5
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.7e-141 504.2 293 92.5
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.5e-140 503.1 295 91.5
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 2.8e-139 498.8 292 92.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 8.4e-136 487.3 295 90.2
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 2.7e-134 482.3 292 89.0
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 4.6e-134 481.5 298 88.3
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 3.0e-133 478.8 292 88.4
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 3.1e-130 468.8 300 85.7
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.6e-126 456.4 297 86.9
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.6e-126 455.3 298 83.6
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.1e-122 443.7 293 83.6
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.8e-115 419.1 299 78.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 3.9e-109 398.7 294 78.6
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.6e-105 386.0 262 80.2
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 7.5e-100 367.9 295 70.2
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 5.3e-98 361.7 299 66.9
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 9.1e-98 360.9 295 69.2
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.2e-97 360.5 296 68.9
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 5.9e-97 358.2 295 68.1
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.9e-95 353.2 297 67.7
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 9.4e-95 350.9 297 66.3
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 3.6e-94 349.0 299 66.2
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.0e-93 345.9 297 65.3
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 6.8e-93 344.7 297 65.7
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 8.8e-93 344.4 297 65.7
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 9.8e-92 340.9 296 65.5
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.7e-91 340.1 297 65.3
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 8.3e-91 337.8 291 65.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.1e-90 337.4 296 64.2
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 3.1e-90 335.9 298 63.4
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 4.1e-90 335.5 296 64.5
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 7.0e-90 334.7 296 64.5
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 2.0e-89 333.2 299 63.2
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.7e-89 332.8 296 62.8
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.7e-89 332.8 299 64.5
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.5e-89 332.4 296 62.8
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 7.7e-89 331.3 295 64.4
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.0e-88 330.9 293 64.5
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.7e-88 330.1 296 62.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.2e-88 329.7 298 65.1
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 2.9e-88 329.3 284 64.8
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.9e-88 329.3 296 62.2
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 2.9e-88 329.3 294 63.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 8.5e-88 327.8 296 61.8
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.1e-87 327.4 296 62.5
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.5e-87 327.0 295 63.4
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 3.2e-87 325.9 297 64.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.2e-86 323.9 297 63.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.2e-86 323.9 297 64.3
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.2e-86 323.9 305 61.3
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 3.6e-86 322.4 297 64.3
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 3.6e-86 322.4 297 64.3
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 6.1e-86 321.6 300 60.7
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 1.8e-85 320.1 322 58.7
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.8e-85 320.1 297 60.6
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 6.8e-85 318.2 295 62.7
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 8.8e-85 317.8 297 61.3
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.5e-84 317.0 297 62.0
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 3.4e-84 315.8 297 60.6
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 3.4e-84 315.8 261 67.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 5.7e-84 315.1 259 67.2
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 7.5e-84 314.7 337 56.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 9.8e-84 314.3 296 61.8
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 3.7e-83 312.4 313 59.1
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 3.7e-83 312.4 258 68.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 4.9e-83 312.0 299 60.2
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 4.9e-83 312.0 297 62.0
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 3.1e-82 309.3 297 60.6
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 1.2e-81 307.4 313 57.5
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 2.0e-81 306.6 306 57.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 3.5e-81 305.8 361 53.5
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 3.5e-81 305.8 294 61.6
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.0e-80 304.3 299 59.9
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.7e-80 303.5 292 59.6
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 4.3e-79 298.9 323 55.7
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.1e-78 296.6 296 58.8
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.8e-78 296.2 307 57.7
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 3.6e-78 295.8 297 59.6
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.6e-78 295.8 388 49.2
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.4e-77 293.9 252 62.7
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 4.0e-77 292.4 214 74.8
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 8.9e-77 291.2 289 58.1
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 5.7e-76 288.5 298 58.7
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 2.2e-75 286.6 301 57.5
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.9e-75 286.2 251 62.9
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 2.9e-75 286.2 301 57.1
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.7e-75 285.8 358 51.4
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 6.4e-75 285.0 295 58.6
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.4e-74 283.9 252 61.9
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 9.2e-74 281.2 299 57.2
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.2e-73 280.8 252 63.9
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 2.0e-73 280.0 298 58.4
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.7e-73 279.6 252 64.3
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.7e-72 276.9 299 56.9
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 5.0e-72 275.4 388 47.4
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 8.0e-70 268.1 221 67.9
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 8.0e-70 268.1 296 56.8
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.0e-69 267.7 252 59.5
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.1e-66 257.7 297 53.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 2.5e-63 246.5 240 60.8
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.6e-62 242.7 200 69.5
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 2.3e-61 240.0 251 52.6
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.1e-57 226.9 216 60.2
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.2e-54 215.3 183 66.7
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.2e-52 211.1 174 68.4
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.4e-52 209.5 307 48.5
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 2.8e-46 189.9 183 59.0
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 3.6e-46 189.5 274 45.6
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.0e-45 186.0 238 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 5.2e-45 185.7 241 44.4
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 2.2e-43 180.3 180 60.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.4e-42 177.6 227 46.3
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 3.2e-42 176.4 240 44.6
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 6.9e-37 158.7 152 61.2
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 7.6e-36 155.2 233 42.1
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 3.5e-33 146.4 164 54.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 7.9e-33 145.2 248 37.9
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.4e-29 133.7 181 51.4
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 2.0e-28 130.6 156 51.3
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 7.6e-28 128.6 121 57.0
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 3.8e-27 126.3 116 62.1
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.9e-27 125.9 130 57.7
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.5e-23 113.6 176 44.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 3.3e-23 113.2 120 53.3
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 4.3e-23 112.8 236 32.6
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 5.3e-21 105.9 84 69.0
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.9e-18 97.4 107 53.3
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.9e-18 97.4 107 53.3
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.7e-17 93.6 107 52.3
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.7e-14 83.2 97 50.5
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 7.6e-12 75.5 62 62.9
Aa31LG8G9420 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.8e-11 73.2 62 66.1
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 5.0e-11 72.8 212 25.9
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 2.3e-08 63.9 210 27.6
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 6.7e-08 62.4 163 35.0
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 50 64.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 50 64.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 50 64.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 6.7e-08 62.4 50 64.0


User provided reference genes

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