Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 9.1e-101 370.5 230 100.0
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.6e-89 333.2 230 87.0
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 2.4e-85 319.3 232 78.9
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 5.3e-85 318.2 232 79.7
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 5.3e-85 318.2 232 79.7
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 5.3e-85 318.2 232 79.7
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 1.6e-84 316.6 232 78.4
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.2e-81 307.0 234 77.8
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.0e-71 273.1 230 75.2
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.8e-69 266.5 234 70.1
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 4.4e-63 245.4 230 71.7
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 3.6e-57 225.7 232 68.5
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 9.2e-45 184.5 234 52.6
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 7.3e-42 174.9 222 55.0
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.2e-39 167.5 230 51.7
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 3.4e-39 166.0 229 49.8
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 3.4e-39 166.0 229 49.8
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 4.4e-39 165.6 228 51.3
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 9.9e-39 164.5 226 51.8
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 9.9e-39 164.5 228 49.1
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.3e-38 164.1 229 52.4
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 2.9e-38 162.9 202 51.5
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 2.9e-38 162.9 227 49.8
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 8.3e-38 161.4 229 49.3
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 5.4e-37 158.7 230 49.1
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.2e-36 157.5 232 46.6
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 6.0e-36 155.2 229 48.0
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.3e-27 126.7 208 47.1
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.6e-25 119.4 229 41.0
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 9.9e-23 111.3 240 38.3
C03p53500 Brassica napus HOM05D005697 ORTHO05D006951 3.5e-20 102.8 112 64.3
BolC3t17610H Brassica oleracea HOM05D005697 ORTHO05D006951 3.5e-20 102.8 112 64.3
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 3.9e-19 99.4 173 44.5
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 8.7e-19 98.2 235 40.9
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 5.6e-18 95.5 129 45.7
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 4.8e-17 92.4 117 48.7
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 4.8e-17 92.4 222 37.4
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 1.1e-16 91.3 266 34.6
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 1.1e-16 91.3 226 36.3
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.8e-16 90.5 195 38.5
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.8e-16 90.5 224 37.1
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.4e-16 90.1 231 35.5
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 4.0e-16 89.4 192 39.1
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 4.0e-16 89.4 192 39.1
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 5.3e-16 89.0 227 36.6
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 9.0e-16 88.2 237 35.4
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 1.2e-15 87.8 120 47.5
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.2e-15 87.8 237 35.4
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 1.5e-15 87.4 196 38.3
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.5e-15 87.4 232 34.1
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 2.0e-15 87.0 117 47.9
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 2.0e-15 87.0 239 34.3
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.6e-15 86.7 237 35.0
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 3.4e-15 86.3 238 35.3
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 3.4e-15 86.3 158 40.5
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 4.5e-15 85.9 242 38.4
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 4.5e-15 85.9 237 35.0
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.8e-15 85.5 236 35.2
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 5.8e-15 85.5 224 41.1
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 5.8e-15 85.5 188 37.8
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 7.6e-15 85.1 229 39.7
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 9.9e-15 84.7 226 34.5
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 1.3e-14 84.3 124 43.5
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.3e-14 84.3 223 34.1
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.3e-14 84.3 203 36.0
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.7e-14 84.0 223 36.3
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 1.7e-14 84.0 172 43.6
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.2e-14 83.6 188 36.2
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 2.2e-14 83.6 221 35.3
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 2.9e-14 83.2 197 38.1
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 2.9e-14 83.2 212 37.7
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 3.8e-14 82.8 206 34.5
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 6.4e-14 82.0 229 33.6
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 6.4e-14 82.0 113 47.8
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 6.4e-14 82.0 235 33.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 8.4e-14 81.6 111 45.0
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 8.4e-14 81.6 262 31.7
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.1e-13 81.3 188 38.3
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.1e-13 81.3 199 35.7
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.4e-13 80.9 222 35.1
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 1.4e-13 80.9 240 35.0
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.9e-13 80.5 134 41.0
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 2.4e-13 80.1 117 44.4
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 2.4e-13 80.1 169 34.9
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 3.2e-13 79.7 230 39.6
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 3.2e-13 79.7 103 44.7
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 4.2e-13 79.3 222 35.1
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 4.2e-13 79.3 233 30.5
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 5.4e-13 79.0 210 34.8
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.4e-13 79.0 197 38.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 7.1e-13 78.6 196 35.7
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 7.1e-13 78.6 198 36.4
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 9.3e-13 78.2 198 39.9
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.2e-12 77.8 182 35.2
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.6e-12 77.4 192 41.1
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 2.1e-12 77.0 237 36.3
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 2.1e-12 77.0 239 32.2
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 2.1e-12 77.0 229 32.3
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 2.7e-12 76.6 177 39.0
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.5e-12 76.3 142 38.0
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 3.5e-12 76.3 219 30.6
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.5e-12 76.3 182 35.2
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 6.0e-12 75.5 240 33.8
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 6.0e-12 75.5 231 40.3
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 7.9e-12 75.1 224 33.5
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.3e-11 74.3 192 41.1
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.3e-11 74.3 211 34.6
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 2.3e-11 73.6 233 33.5
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 3.9e-11 72.8 196 41.3
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 3.9e-11 72.8 217 33.6
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 5.1e-11 72.4 137 38.0
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.1e-10 71.2 217 30.9
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 1.1e-10 71.2 240 29.6
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 1.5e-10 70.9 119 41.2
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 2.5e-10 70.1 199 39.7
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 1.6e-09 67.4 180 32.8
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 2.8e-09 66.6 178 32.0
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 8.1e-09 65.1 110 40.0
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 8.1e-09 65.1 169 32.0
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 5.3e-08 62.4 217 32.7
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 5.3e-08 62.4 218 30.7
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 6.9e-08 62.0 116 38.8
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.6e-07 60.1 222 31.1
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 5.8e-07 58.9 137 40.9
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 5.8e-07 58.9 233 31.3
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 5.8e-07 58.9 244 27.0
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 7.6e-07 58.5 182 31.3
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.3e-06 57.8 198 31.3


User provided reference genes

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