Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 6.5e-239 830.9 609 100.0
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.9e-138 496.5 617 61.8
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 6.0e-136 488.8 629 57.6
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 2.3e-135 486.9 621 60.4
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 2.5e-134 483.4 627 60.9
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 1.6e-133 480.7 630 60.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 2.1e-133 480.3 626 60.9
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.2e-131 474.6 624 60.3
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.5e-131 474.2 627 58.2
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.0e-131 473.8 629 60.1
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.1e-124 449.9 633 57.0
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 6.1e-112 409.1 643 51.5
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 8.8e-111 405.2 603 56.4
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 5.7e-110 402.5 589 53.1
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.5e-97 361.3 665 42.1
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 4.8e-93 346.3 621 42.4
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 6.5e-90 335.9 674 38.4
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 4.7e-88 329.7 661 41.1
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 2.2e-85 320.9 644 40.4
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.8e-85 320.5 648 42.1
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.8e-84 317.8 623 42.1
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 4.5e-83 313.2 636 42.3
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.3e-82 311.6 618 39.8
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.9e-82 310.5 658 39.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.0e-82 309.7 623 47.8
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 2.1e-80 304.3 648 38.3
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 4.0e-79 300.1 669 36.2
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 5.2e-79 299.7 640 44.2
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.5e-78 298.1 502 51.6
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.6e-78 297.4 630 39.2
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 3.4e-78 297.0 635 47.9
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 5.7e-78 296.2 578 35.6
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 2.2e-77 294.3 670 39.7
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 3.7e-77 293.5 626 49.0
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 8.3e-77 292.4 625 41.1
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.4e-76 291.6 700 32.7
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.8e-76 291.2 650 44.2
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.2e-76 290.4 641 40.1
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 5.4e-76 289.7 670 40.1
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 3.5e-75 287.0 656 39.3
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.5e-75 287.0 625 40.6
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 4.6e-75 286.6 695 42.0
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.3e-74 285.0 661 42.2
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.7e-74 284.6 639 40.7
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 1.7e-74 284.6 665 34.7
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 2.3e-74 284.3 660 41.1
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 6.6e-74 282.7 646 37.9
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.5e-73 281.6 664 37.7
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 1.9e-73 281.2 677 39.7
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 2.5e-73 280.8 631 42.9
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 3.3e-73 280.4 669 36.9
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 9.5e-73 278.9 678 38.9
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.1e-72 277.7 681 39.1
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.6e-72 276.9 513 42.1
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 6.2e-72 276.2 631 42.0
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 3.1e-71 273.9 647 37.9
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 4.0e-71 273.5 642 39.9
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 4.4e-70 270.0 663 39.1
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.8e-70 269.6 444 46.4
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.2e-69 267.7 640 38.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 2.2e-69 267.7 629 37.0
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 2.2e-69 267.7 638 43.1
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 2.2e-69 267.7 646 44.9
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.9e-69 266.5 625 35.7
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 4.9e-69 266.5 401 46.4
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 6.4e-69 266.2 653 47.5
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.4e-69 266.2 635 48.5
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.4e-69 266.2 630 47.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 6.4e-69 266.2 409 47.4
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.9e-68 264.6 671 38.9
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.9e-68 264.6 639 36.0
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 2.4e-68 264.2 676 41.4
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 2.4e-68 264.2 431 48.0
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 2.4e-68 264.2 414 46.9
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 4.1e-68 263.5 643 45.1
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 9.2e-68 262.3 637 37.0
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 9.2e-68 262.3 557 46.5
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.3e-66 257.7 673 40.3
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 8.6e-66 255.8 622 42.8
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.5e-65 255.0 601 37.6
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.1e-63 248.8 681 37.6
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.4e-63 248.4 670 37.5
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 2.3e-63 247.7 662 39.4
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 4.0e-63 246.9 630 41.6
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 1.2e-62 245.4 428 50.2
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 1.5e-62 245.0 511 44.8
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 3.4e-62 243.8 654 35.8
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 3.4e-62 243.8 643 38.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 9.9e-62 242.3 426 46.7
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 2.2e-61 241.1 623 41.1
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 3.5e-59 233.8 541 45.8
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 7.3e-57 226.1 635 40.9
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 6.2e-56 223.0 636 35.7
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 6.8e-55 219.5 400 43.5
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.2e-54 218.8 401 43.1
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 3.4e-54 217.2 555 42.2
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 2.9e-53 214.2 626 33.1
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.8e-53 213.8 615 36.4
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.7e-50 204.9 298 46.0
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.6e-50 203.0 638 40.3
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 4.3e-49 200.3 632 33.2
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.4e-46 190.7 539 43.8
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 3.4e-46 190.7 528 38.8
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 1.4e-44 185.3 234 46.2
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.1e-43 181.4 650 32.0
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.0e-42 179.1 650 32.6
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 4.0e-39 167.2 468 36.3
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.2e-38 165.6 644 36.6
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.0e-38 164.9 165 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 4.5e-38 163.7 665 30.8
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.0e-35 153.3 285 40.4
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.1e-31 142.5 667 31.0
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 4.0e-31 140.6 164 48.8
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.9e-28 131.7 437 33.6
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 2.3e-26 124.8 136 50.7
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 7.9e-19 99.8 304 38.2
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.5e-17 95.5 288 31.6
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 2.8e-16 91.3 323 29.4
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 8.2e-16 89.7 358 38.0
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 8.2e-16 89.7 136 42.6
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 8.2e-16 89.7 535 34.2
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.4e-15 89.0 362 34.0
BcaB01g00592 Brassica carinata HOM05D057673 ORTHO05D006636 7.2e-12 76.6 86 52.3
BcaB01g00593 Brassica carinata HOM05D057673 ORTHO05D006636 7.2e-12 76.6 86 52.3
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 3.6e-11 74.3 412 29.4
C01p37060 Brassica napus HOM05D000032 ORTHO05D015229 1.9e-09 68.6 86 50.0
C04p08650 Brassica napus HOM05D004293 ORTHO05D015229 2.8e-08 64.7 91 46.2
BolC5t30978H Brassica oleracea HOM05D004293 ORTHO05D015229 6.3e-08 63.5 86 45.3
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 2.0e-06 58.5 119 36.1
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 2.6e-06 58.2 161 41.0
BcaB05g23549 Brassica carinata HOM05D002776 ORTHO05D091522 3.4e-06 57.8 85 44.7
BcaC03g16242 Brassica carinata HOM05D030143 ORTHO05D002152 3.4e-06 57.8 40 62.5


User provided reference genes

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