Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 3.8e-194 681.4 363 100.0
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.0e-166 589.3 365 88.8
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.2e-163 580.1 367 85.8
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-159 566.2 364 86.3
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.8e-159 566.2 365 85.8
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.5e-158 563.1 364 85.7
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 3.3e-158 562.0 366 84.4
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 7.5e-158 560.8 366 85.2
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 7.5e-158 560.8 366 84.4
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-157 560.1 367 84.5
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.3e-157 560.1 367 84.5
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 3.7e-157 558.5 365 84.9
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 4.1e-156 555.1 367 84.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-155 553.5 367 84.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.2e-155 553.5 367 84.5
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 2.0e-155 552.7 366 83.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-154 548.9 366 83.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.9e-154 548.9 366 83.3
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 3.6e-152 542.0 367 83.1
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-151 539.3 366 82.2
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.5e-150 536.6 365 81.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.4e-148 530.0 349 84.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.4e-148 530.0 367 81.7
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.1e-129 467.2 349 75.9
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.0e-111 405.6 371 60.9
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 3.4e-110 402.5 374 60.4
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-88 330.5 368 51.1
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.1e-88 330.1 371 52.3
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.8e-88 329.7 366 49.7
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.8e-88 329.7 360 50.8
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.4e-87 327.4 375 51.5
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.8e-87 327.0 366 50.5
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.3e-87 325.5 378 47.6
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.0e-86 323.6 368 51.1
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.6e-86 323.2 373 51.5
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.6e-86 323.2 373 51.5
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 7.6e-86 321.6 368 50.0
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.7e-85 320.5 378 47.6
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.7e-85 320.5 371 49.1
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.9e-85 319.7 364 50.0
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 6.4e-85 318.5 368 50.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 2.4e-84 316.6 370 50.0
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 2.4e-84 316.6 371 48.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 5.5e-84 315.5 368 48.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 5.5e-84 315.5 368 48.6
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 9.3e-84 314.7 367 48.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-83 314.3 371 49.9
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.3e-82 310.8 378 47.6
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 5.1e-82 308.9 367 48.5
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.7e-82 308.5 371 48.8
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.7e-82 308.5 371 48.2
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.9e-81 307.0 379 47.0
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.9e-81 307.0 371 48.2
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-81 306.6 371 47.7
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.5e-81 306.6 371 47.7
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.3e-81 305.8 371 48.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 7.4e-81 305.1 373 48.3
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 7.4e-81 305.1 370 48.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.6e-81 304.7 370 47.6
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.6e-80 303.9 336 52.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.6e-80 303.9 371 47.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.8e-80 303.1 369 49.9
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.8e-80 302.4 369 48.0
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 6.2e-80 302.0 368 48.1
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 8.2e-80 301.6 369 48.2
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.1e-79 301.2 364 47.8
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.8e-79 300.4 376 46.0
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.5e-78 297.4 352 49.7
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.5e-78 297.4 321 50.8
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.4e-78 296.2 377 45.1
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 5.8e-78 295.4 370 47.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 7.6e-78 295.0 329 49.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.9e-77 293.1 365 47.1
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.9e-77 292.4 370 46.2
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 8.4e-77 291.6 374 46.0
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-76 290.8 370 46.5
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.2e-76 289.7 379 43.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.2e-76 289.3 414 45.9
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 9.3e-76 288.1 353 46.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 4.6e-75 285.8 321 49.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 4.6e-75 285.8 352 46.3
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 7.9e-75 285.0 358 45.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.3e-74 283.5 365 45.5
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 3.9e-74 282.7 358 45.8
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 6.7e-74 282.0 361 44.3
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 6.7e-74 282.0 365 44.9
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.5e-73 280.8 337 47.2
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.4e-73 278.5 365 45.5
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.2e-72 276.9 365 45.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.7e-72 276.2 364 42.0
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 4.8e-72 275.8 367 45.5
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 4.1e-71 272.7 366 43.7
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 4.1e-71 272.7 374 44.4
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 5.3e-71 272.3 367 46.3
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.6e-70 270.0 370 42.7
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.0e-69 268.1 369 45.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.3e-69 267.7 370 44.3
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.3e-69 267.7 372 42.7
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.7e-69 267.3 347 46.1
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 3.8e-69 266.2 370 43.5
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 3.2e-68 263.1 307 47.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 5.5e-68 262.3 369 43.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 7.2e-68 261.9 365 43.8
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 9.4e-68 261.5 349 44.1
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 7.9e-67 258.5 382 42.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 6.7e-66 255.4 326 43.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 1.5e-65 254.2 366 44.0
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 2.5e-65 253.4 373 43.2
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 9.7e-65 251.5 367 41.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 4.8e-64 249.2 303 44.6
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.5e-62 242.7 366 40.2
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 5.9e-62 242.3 346 43.9
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 7.7e-62 241.9 348 39.9
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.5e-60 236.9 395 40.0
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.5e-60 236.9 333 43.5
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.5e-60 235.7 362 42.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.6e-59 234.2 358 37.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 5.1e-58 229.2 346 42.8
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 7.4e-57 225.3 355 40.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 8.2e-56 221.9 326 40.2
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.8e-55 220.7 367 39.8
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.1e-55 219.9 370 38.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.1e-55 219.5 334 42.8
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.8e-53 213.0 344 38.4
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.1e-52 211.5 275 44.7
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-51 208.0 277 44.4
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.0e-49 200.7 377 38.2
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 5.7e-49 199.1 331 40.8
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.6e-43 181.0 194 49.0
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.0e-42 176.8 277 39.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.1e-28 131.7 128 57.0
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.6e-27 127.9 379 32.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 4.0e-26 123.2 130 51.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.4e-25 120.2 136 44.1
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.9e-24 116.3 138 41.3
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.0e-21 108.6 364 29.1
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-21 108.2 130 43.1
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.7e-21 107.8 125 44.0
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.1e-19 99.4 197 33.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.9e-18 95.5 384 25.3
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.2e-17 95.1 158 38.0
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.4e-17 93.6 377 26.0
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 5.8e-17 92.8 368 25.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 4.9e-16 89.7 100 42.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.3e-16 89.0 260 28.5
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.9e-12 77.8 238 26.1
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.6e-11 74.7 127 32.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.1e-10 72.0 97 44.3
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 1.4e-07 61.6 71 39.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 7.0e-07 59.3 83 34.9
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-06 58.5 77 35.1
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 4.6e-06 56.6 76 35.5
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 6.0e-06 56.2 61 42.6


User provided reference genes

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