Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-55 218.8 109 100.0
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.9e-40 169.1 109 83.5
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-38 162.2 109 81.7
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.2e-38 161.0 109 79.8
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-37 159.8 109 81.7
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 9.7e-37 156.8 109 80.7
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 4.8e-36 154.5 109 80.7
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.4e-35 152.9 109 79.8
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 1.6e-34 149.4 109 75.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-33 146.4 110 75.5
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 2.9e-33 145.2 103 77.7
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.2e-32 140.6 110 73.6
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 8.0e-31 137.1 115 73.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.1e-27 124.8 109 64.2
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.8e-18 94.0 103 59.2
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 5.0e-17 91.3 103 53.4
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.1e-16 90.1 98 57.1
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 1.9e-16 89.4 92 56.5
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.1e-15 85.9 105 52.4
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.1e-15 85.9 103 51.5
BcaC01g03387 Brassica carinata HOM05D037847 ORTHO05D032416 2.8e-15 85.5 109 54.1
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.7e-15 84.7 105 50.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 6.1e-15 84.3 105 53.3
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 8.0e-15 84.0 103 50.5
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.8e-14 82.8 101 49.5
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.8e-14 82.8 103 48.5
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.3e-14 82.4 110 49.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.3e-14 82.4 110 50.0
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.3e-14 82.4 106 50.0
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.3e-14 82.4 105 47.6
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.0e-14 82.0 110 50.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.8e-14 80.9 110 50.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 8.9e-14 80.5 111 47.7
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 8.9e-14 80.5 114 45.6
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-13 79.7 104 48.1
C03p53040 Brassica napus HOM05D037847 ORTHO05D032416 2.6e-13 79.0 60 75.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.6e-13 79.0 111 48.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.6e-13 79.0 100 50.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 2.6e-13 79.0 112 45.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.6e-13 79.0 103 48.5
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 3.4e-13 78.6 101 53.5
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.4e-13 78.2 130 43.1
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.4e-13 78.2 130 43.1
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.4e-13 78.2 100 49.0
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 5.8e-13 77.8 103 47.6
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.8e-13 77.8 110 45.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 7.5e-13 77.4 103 47.6
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 7.5e-13 77.4 100 50.0
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 7.5e-13 77.4 103 44.7
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 9.8e-13 77.0 111 44.1
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 9.8e-13 77.0 103 47.6
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 9.8e-13 77.0 103 47.6
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 9.8e-13 77.0 103 47.6
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 9.8e-13 77.0 96 51.0
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.3e-12 76.6 115 44.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.7e-12 76.3 103 46.6
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-12 76.3 112 46.4
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.7e-12 76.3 112 46.4
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 2.2e-12 75.9 103 48.5
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.2e-12 75.9 105 46.7
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 2.2e-12 75.9 103 46.6
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.9e-12 75.5 91 56.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 3.7e-12 75.1 113 47.8
BolC3t17568H Brassica oleracea HOM05D037847 ORTHO05D032416 4.9e-12 74.7 60 73.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.9e-12 74.7 105 48.6
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.9e-12 74.7 102 48.0
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.9e-12 74.7 96 45.8
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.4e-12 74.3 103 46.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 6.4e-12 74.3 97 49.5
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.4e-12 74.3 96 50.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.3e-12 73.9 118 49.2
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 8.3e-12 73.9 103 44.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 8.3e-12 73.9 96 49.0
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 8.3e-12 73.9 96 49.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-11 73.2 96 47.9
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.4e-11 73.2 115 49.6
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.4e-11 73.2 109 47.7
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.4e-11 72.4 124 45.2
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.4e-11 72.4 102 50.0
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.2e-11 72.0 97 44.3
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.1e-11 71.6 99 44.4
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.1e-11 71.6 103 43.7
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.1e-11 71.6 95 49.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 5.4e-11 71.2 93 47.3
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 5.4e-11 71.2 105 47.6
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.4e-11 71.2 97 44.3
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.0e-11 70.9 122 48.4
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 7.0e-11 70.9 89 49.4
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 7.0e-11 70.9 115 43.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.2e-10 70.1 95 44.2
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.2e-10 70.1 109 45.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.6e-10 69.7 97 48.5
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.6e-10 69.7 109 46.8
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.6e-10 69.7 106 42.5
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.0e-10 69.3 98 49.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.7e-10 68.9 97 47.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.7e-10 68.9 101 44.6
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.7e-10 68.9 99 43.4
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 3.5e-10 68.6 98 43.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.5e-10 68.6 93 45.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-10 68.6 112 44.6
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.5e-10 68.6 101 41.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.5e-10 68.6 88 46.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 4.6e-10 68.2 91 45.1
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 4.6e-10 68.2 107 44.9
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.0e-10 67.8 88 47.7
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 6.0e-10 67.8 94 45.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 6.0e-10 67.8 93 46.2
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 6.0e-10 67.8 89 49.4
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 1.0e-09 67.0 94 45.7
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.0e-09 67.0 92 47.8
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.0e-09 67.0 92 47.8
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.0e-09 67.0 118 40.7
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.0e-09 67.0 105 45.7
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-09 66.6 94 47.9
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.3e-09 66.6 94 47.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.3e-09 66.6 97 48.5
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-09 66.6 119 40.3
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.3e-09 66.6 119 40.3
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.7e-09 66.2 95 45.3
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.3e-09 65.9 94 44.7
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.3e-09 65.9 101 40.6
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.3e-09 65.9 99 46.5
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.3e-09 65.9 95 48.4
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-09 65.5 95 45.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-09 65.5 95 45.3
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 3.0e-09 65.5 117 41.0
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 3.9e-09 65.1 103 44.7
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 3.9e-09 65.1 98 46.9
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 5.0e-09 64.7 102 46.1
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 6.6e-09 64.3 99 40.4
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 6.6e-09 64.3 101 44.6
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 6.6e-09 64.3 99 42.4
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.1e-08 63.5 98 44.9
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.1e-08 63.5 104 43.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-08 63.5 94 45.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.1e-08 63.5 96 43.8
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 1.5e-08 63.2 99 41.4
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.5e-08 63.2 102 45.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.5e-08 63.2 94 43.6
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.5e-08 63.2 104 42.3
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.9e-08 62.8 88 45.5
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 2.5e-08 62.4 99 44.4
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.5e-08 62.4 89 43.8
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.3e-08 62.0 88 50.0
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.3e-08 62.0 95 40.0
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 5.6e-08 61.2 112 37.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.6e-08 61.2 99 46.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 9.5e-08 60.5 100 44.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 9.5e-08 60.5 123 39.8
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 9.5e-08 60.5 99 48.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.6e-07 59.7 102 39.2
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.6e-07 59.7 97 44.3
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-07 59.7 101 45.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.1e-07 59.3 92 43.5
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.8e-07 58.9 94 42.6
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 4.7e-07 58.2 100 42.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 6.2e-07 57.8 104 37.5
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.1e-06 57.0 96 44.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.4e-06 56.6 104 42.3
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 3.1e-06 55.5 96 38.5
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.0e-06 55.1 96 44.8
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.0e-06 55.1 98 39.8
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.0e-06 55.1 98 39.8
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 5.2e-06 54.7 113 40.7
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 5.2e-06 54.7 89 40.4
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 6.8e-06 54.3 99 42.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.8e-06 54.3 97 43.3


User provided reference genes

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