Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.4e-64 248.4 149 100.0
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.5e-59 230.3 149 81.9
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.6e-58 229.6 150 83.3
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 4.7e-58 228.0 149 81.9
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.5e-56 223.0 149 81.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.1e-54 214.9 141 81.6
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 5.4e-54 214.5 142 81.0
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 7.0e-54 214.2 143 80.4
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 9.2e-54 213.8 141 80.9
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.0e-53 212.6 149 77.9
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 2.7e-53 212.2 149 77.9
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.7e-53 212.2 141 80.1
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 1.7e-52 209.5 139 79.1
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 3.3e-51 205.3 136 80.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 3.3e-51 205.3 140 80.7
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 3.3e-51 205.3 140 80.7
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 3.3e-51 205.3 140 80.7
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 9.5e-51 203.8 150 76.0
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.6e-50 201.8 145 78.6
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 4.7e-50 201.4 145 77.9
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 8.0e-50 200.7 150 75.3
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 2.3e-49 199.1 136 78.7
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 4.0e-49 198.4 145 77.9
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.2e-45 186.8 150 70.0
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.2e-45 186.8 150 70.0
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 1.2e-45 186.8 150 70.0
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 6.6e-44 181.0 150 66.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 8.6e-44 180.6 150 67.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.1e-43 180.3 148 64.2
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.5e-43 179.9 148 68.2
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.9e-43 179.5 143 65.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 3.3e-43 178.7 150 65.3
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.3e-43 178.3 138 65.2
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 5.6e-43 177.9 147 63.9
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.6e-42 176.4 149 64.4
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.6e-42 176.4 138 65.9
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.1e-42 176.0 148 66.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 2.1e-42 176.0 142 66.9
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 2.8e-42 175.6 142 66.9
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.8e-42 175.6 150 69.3
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.8e-42 175.6 150 65.3
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 2.8e-42 175.6 140 67.1
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.6e-42 175.3 150 63.3
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 4.7e-42 174.9 137 66.4
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.7e-42 174.9 142 66.2
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 6.2e-42 174.5 140 67.9
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 6.2e-42 174.5 140 65.7
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 6.2e-42 174.5 150 64.0
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 6.2e-42 174.5 150 64.0
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.1e-41 173.7 150 64.0
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.1e-41 173.7 148 66.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.1e-41 173.7 142 66.2
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.1e-41 173.7 150 64.7
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.4e-41 173.3 150 64.7
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.4e-41 173.3 140 65.0
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.4e-41 173.3 143 64.3
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.8e-41 172.9 138 63.8
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.8e-41 172.9 139 69.8
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.3e-41 172.6 139 66.9
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.3e-41 172.6 139 65.5
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 3.1e-41 172.2 138 64.5
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.1e-41 172.2 144 65.3
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.1e-41 172.2 144 65.3
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.1e-41 172.2 144 65.3
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.1e-41 172.2 147 63.3
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 4.0e-41 171.8 149 62.4
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 4.0e-41 171.8 149 62.4
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 4.0e-41 171.8 140 65.7
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 4.0e-41 171.8 145 63.4
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 5.2e-41 171.4 139 64.7
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.2e-41 171.4 146 63.7
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 6.8e-41 171.0 140 65.0
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 6.8e-41 171.0 144 64.6
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 6.8e-41 171.0 144 64.6
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 8.9e-41 170.6 150 62.0
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-40 170.2 145 63.4
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.5e-40 169.9 147 61.2
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.5e-40 169.9 146 62.3
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.5e-40 169.9 140 66.4
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.5e-40 169.9 149 62.4
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.5e-40 169.9 143 64.3
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.0e-40 169.5 143 62.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 2.0e-40 169.5 140 64.3
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.0e-40 169.5 142 63.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 2.0e-40 169.5 140 63.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.6e-40 169.1 145 61.4
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 2.6e-40 169.1 150 68.7
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 2.6e-40 169.1 139 64.7
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 3.4e-40 168.7 146 61.0
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 4.4e-40 168.3 149 61.7
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.4e-40 168.3 144 63.9
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 5.8e-40 167.9 141 63.8
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 5.8e-40 167.9 139 64.0
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.8e-40 167.9 146 61.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 5.8e-40 167.9 145 63.4
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 7.5e-40 167.5 140 62.9
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 7.5e-40 167.5 140 62.9
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 9.9e-40 167.2 139 63.3
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 9.9e-40 167.2 144 63.9
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 9.9e-40 167.2 140 62.9
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.3e-39 166.8 140 60.7
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.3e-39 166.8 149 59.1
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.3e-39 166.8 149 59.1
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-39 166.8 144 62.5
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 2.2e-39 166.0 145 61.4
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.9e-39 165.6 149 63.1
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.9e-39 165.6 142 59.2
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 2.9e-39 165.6 146 61.6
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.7e-39 165.2 139 63.3
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 4.9e-39 164.9 149 64.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 6.4e-39 164.5 133 63.2
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 8.3e-39 164.1 140 62.1
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 8.3e-39 164.1 135 63.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 8.3e-39 164.1 139 62.6
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 8.3e-39 164.1 145 60.7
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.1e-38 163.7 149 62.4
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 1.1e-38 163.7 148 60.1
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.1e-38 163.7 147 60.5
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.4e-38 163.3 142 58.5
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 2.4e-38 162.5 139 63.3
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.4e-38 161.4 137 62.0
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 9.2e-38 160.6 139 59.0
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.6e-37 158.3 147 59.9
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 4.6e-37 158.3 124 66.1
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 6.0e-37 157.9 147 59.9
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.0e-36 155.6 139 60.4
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.0e-36 155.6 147 59.9
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 8.6e-36 154.1 134 61.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.1e-33 147.1 145 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 6.4e-31 137.9 139 51.8
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 6.4e-31 137.9 145 51.0
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 8.4e-31 137.5 132 56.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 5.4e-30 134.8 118 59.3
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.6e-29 133.3 91 80.2
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.1e-29 132.9 121 59.5
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.5e-29 132.1 130 54.6
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.4e-25 120.2 133 47.4
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.8e-25 119.8 129 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.7e-23 113.2 107 52.3
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 4.6e-21 105.1 139 46.8
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.0e-20 102.4 91 64.8
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.6e-18 96.7 109 51.4
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 3.6e-18 95.5 127 40.9
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.4e-17 92.8 138 37.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.4e-11 71.2 49 69.4
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 7.4e-11 71.2 86 43.0


User provided reference genes

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