Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 6.3e-233 810.4 426 100.0
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 1.2e-186 656.8 427 82.9
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 5.1e-174 614.8 428 77.6
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 4.0e-171 605.1 427 77.0
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 1.4e-168 596.7 439 74.5
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 6.7e-166 587.8 427 74.9
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 7.9e-159 564.3 428 72.7
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 3.0e-158 562.4 425 73.2
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 5.7e-157 558.1 425 72.9
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 2.2e-148 529.6 436 68.8
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 1.0e-137 494.2 446 65.0
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 2.1e-135 486.5 386 69.4
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 9.7e-133 477.6 455 60.2
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 3.0e-126 456.1 390 66.4
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 5.1e-57 226.1 422 37.9
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 4.8e-55 219.5 448 39.7
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 2.1e-50 204.1 428 37.4
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 6.1e-50 202.6 444 37.2
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.1e-48 198.4 449 36.5
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 8.2e-47 192.2 447 36.2
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 2.4e-46 190.7 455 36.9
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 2.4e-46 190.7 461 34.1
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 2.0e-45 187.6 444 35.6
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 2.0e-45 187.6 446 35.9
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 3.4e-45 186.8 392 37.0
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 2.9e-44 183.7 450 35.1
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 5.5e-43 179.5 431 36.0
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 1.6e-42 177.9 429 36.1
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 2.3e-41 174.1 449 35.0
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 2.3e-41 174.1 452 36.5
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 3.9e-41 173.3 278 43.9
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 2.5e-40 170.6 461 32.8
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 7.4e-40 169.1 439 33.9
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 1.7e-39 167.9 506 31.8
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 2.8e-39 167.2 442 34.6
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 2.8e-39 167.2 389 35.0
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 3.7e-39 166.8 443 33.2
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 8.2e-39 165.6 424 34.4
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 1.1e-38 165.2 450 34.4
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 1.2e-37 161.8 269 42.0
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 1.2e-37 161.8 471 35.2
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 2.0e-37 161.0 463 31.5
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 1.0e-36 158.7 445 33.0
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 2.2e-36 157.5 441 32.2
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 6.5e-36 156.0 380 32.9
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 8.5e-36 155.6 460 32.0
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 1.4e-35 154.8 515 30.9
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.4e-35 154.8 255 40.8
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-35 154.1 322 37.9
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 2.5e-35 154.1 408 33.1
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 5.5e-35 152.9 408 34.3
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 1.2e-34 151.8 439 31.7
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 3.6e-34 150.2 425 32.7
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 3.9e-33 146.7 454 31.9
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 3.9e-33 146.7 307 36.8
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 8.8e-33 145.6 444 30.9
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 2.0e-32 144.4 406 34.0
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 2.6e-32 144.1 316 34.8
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 7.4e-32 142.5 378 33.9
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 4.8e-31 139.8 434 31.8
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 4.1e-30 136.7 444 30.9
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 5.3e-30 136.3 424 30.0
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 1.2e-29 135.2 463 30.5
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 1.5e-29 134.8 455 29.7
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 2.0e-29 134.4 427 30.9
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 2.0e-29 134.4 441 31.3
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 4.5e-29 133.3 471 31.4
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 5.9e-29 132.9 419 30.8
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.3e-28 131.7 441 31.3
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 1.7e-28 131.3 424 31.1
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 3.8e-28 130.2 377 32.9
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 8.5e-28 129.0 452 31.4
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 8.5e-28 129.0 318 36.2
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 4.2e-27 126.7 450 30.9
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 5.5e-27 126.3 456 32.2
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 4.7e-26 123.2 472 29.9
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 4.7e-26 123.2 421 30.6
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 1.4e-25 121.7 464 30.4
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 3.9e-25 120.2 212 37.7
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 8.8e-25 119.0 467 30.2
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 2.0e-24 117.9 466 29.0
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 7.4e-24 115.9 439 31.2
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.2e-23 114.4 436 30.0
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 2.2e-23 114.4 383 30.3
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.8e-23 113.2 453 28.7
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 3.1e-22 110.5 473 29.6
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.0e-21 107.8 397 29.2
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.0e-20 105.5 528 25.2
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 1.7e-20 104.8 460 28.9
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 8.5e-20 102.4 436 26.1
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 1.9e-19 101.3 277 30.7
Mapoly0099s0053 Marchantia polymorpha HOM05D005864 ORTHO05D006770 7.2e-19 99.4 283 31.1
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 7.2e-19 99.4 411 28.5
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.2e-18 98.6 332 30.4
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 1.2e-16 92.0 489 26.4
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 1.2e-16 92.0 279 32.6
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 7.5e-16 89.4 351 30.2
Pp3c11_20880 Physcomitrium patens HOM05D005864 ORTHO05D006770 4.1e-14 83.6 244 34.8
Zm00001eb225260 Zea mays HOM05D005864 ORTHO05D006770 4.1e-14 83.6 134 38.8
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 9.1e-14 82.4 398 27.6
TAR626G1271 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.5e-13 80.5 137 38.7
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 7.7e-13 79.3 361 29.1
Pp3c7_5470 Physcomitrium patens HOM05D005864 ORTHO05D006770 1.0e-12 79.0 268 33.2
TAR626G0331 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.2e-11 73.9 72 52.8
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 4.2e-11 73.6 350 27.7
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 5.5e-11 73.2 434 24.4
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 9.4e-11 72.4 363 28.1
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 1.2e-10 72.0 402 28.1
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.1e-10 71.2 184 34.8
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 2.7e-10 70.9 398 26.9
BcaB08g35049 Brassica carinata HOM05D014762 ORTHO05D006770 6.1e-10 69.7 52 69.2
BcaB03g16175 Brassica carinata HOM05D014762 ORTHO05D006770 2.6e-08 64.3 52 65.4
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 3.4e-08 63.9 391 26.3
AagrBONN_evm.TU.Sc2ySwM_369.130 Anthoceros agrestis HOM05D005864 ORTHO05D006770 9.8e-08 62.4 220 29.5
FAN09G4739 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.9e-07 60.1 89 40.4


User provided reference genes

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