Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 0.0e+00 2024.2 1133 100.0
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 0.0e+00 1543.5 1215 75.8
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 0.0e+00 1527.3 1220 75.0
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 0.0e+00 1508.8 1177 74.4
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 0.0e+00 1488.4 1212 75.0
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1420.2 1193 73.6
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1397.9 1162 74.8
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1396.7 1162 74.9
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 0.0e+00 1396.7 1162 74.9
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 0.0e+00 1390.9 1181 73.9
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1390.2 1182 73.9
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 0.0e+00 1202.6 984 73.0
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 0.0e+00 1200.3 1189 63.1
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 0.0e+00 1080.9 1250 55.4
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 6.1e-307 1057.7 1173 59.7
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 5.7e-305 1051.2 1254 53.7
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 2.5e-183 647.1 1185 43.3
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 5.3e-178 629.4 824 53.4
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 6.5e-176 622.5 1271 41.2
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 7.2e-175 619.0 1259 41.3
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 8.0e-174 615.5 1204 40.9
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 8.8e-173 612.1 1283 40.8
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.2e-171 607.4 1244 41.7
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 2.2e-171 607.4 1234 41.8
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.4e-170 604.0 1246 41.7
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.6e-169 601.3 1197 40.3
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.2e-166 591.7 1286 40.0
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.6e-166 591.3 1202 40.3
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 3.7e-163 580.1 1232 39.9
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 5.4e-162 576.2 1255 39.3
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 7.0e-162 575.9 1220 40.3
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 3.8e-160 570.1 1265 39.0
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 2.1e-158 564.3 1272 39.2
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 6.1e-158 562.8 1196 41.5
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 8.0e-158 562.4 1246 38.1
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-156 558.5 1229 40.0
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.4e-156 556.6 1251 38.8
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.7e-155 554.7 1253 38.5
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 6.3e-155 552.7 1250 38.2
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.4e-154 550.8 1147 41.1
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 1.2e-153 548.5 1254 40.0
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.5e-153 546.6 1252 38.0
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 4.5e-153 546.6 1263 40.8
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.0e-152 545.4 1197 38.9
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 1.2e-150 538.5 1253 39.0
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 2.8e-150 537.3 1285 38.4
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.0e-149 535.4 1254 39.1
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 3.0e-149 533.9 1252 38.3
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.7e-147 528.1 1265 39.3
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 2.7e-145 520.8 1184 38.2
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 4.6e-145 520.0 1186 37.9
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 1.0e-144 518.8 1251 38.0
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 3.9e-144 516.9 1219 37.2
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 6.6e-144 516.2 1200 35.5
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.1e-143 515.4 1225 37.5
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 3.3e-143 513.8 1256 37.0
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.2e-142 511.9 1240 38.7
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 1.0e-141 508.8 1215 37.9
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 5.2e-141 506.5 1254 37.6
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 8.3e-139 499.2 1256 36.8
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.2e-137 495.4 1254 36.4
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 4.6e-137 493.4 1264 37.5
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.5e-135 488.4 1201 36.1
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 5.6e-135 486.5 1211 38.4
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 1.3e-131 475.3 1254 36.5
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 4.6e-129 466.8 1213 35.7
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 6.6e-128 463.0 1245 36.5
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.3e-127 460.7 1395 33.6
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 4.3e-127 460.3 1246 36.1
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 6.8e-125 453.0 1273 37.0
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.0e-124 451.4 1178 36.9
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 1.9e-122 444.9 1264 36.2
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 2.4e-122 444.5 1268 34.8
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 3.2e-122 444.1 1229 37.7
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 4.6e-121 440.3 1191 36.1
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.5e-119 435.3 1248 37.1
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 3.6e-118 430.6 1178 36.3
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 2.0e-116 424.9 1257 36.9
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 2.6e-116 424.5 1178 37.2
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 6.4e-115 419.9 1210 35.7
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 8.4e-115 419.5 1155 36.5
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.5e-111 408.7 1161 36.5
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 7.3e-111 406.4 1166 35.6
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.8e-109 401.7 1188 34.5
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 2.2e-107 394.8 1149 34.5
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 6.4e-107 393.3 1092 35.6
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 4.2e-106 390.6 1146 35.9
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.0e-104 384.4 1217 34.7
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 3.0e-104 384.4 1120 33.8
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.1e-102 378.3 1030 37.5
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 9.0e-101 372.9 1193 33.4
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.2e-100 372.5 1180 30.8
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.1e-98 365.9 1224 33.5
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 7.1e-98 363.2 1179 31.6
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 3.8e-91 340.9 1148 32.5
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.4e-90 339.0 1021 35.6
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.9e-82 312.0 1127 33.2
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.1e-79 302.8 1183 30.7
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 8.2e-78 296.6 1046 31.2
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 2.0e-76 292.0 1143 33.6
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 4.5e-76 290.8 1172 29.5
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 5.9e-76 290.4 1209 31.1
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 5.9e-68 263.8 1021 28.8
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 5.0e-67 260.8 1092 27.5
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.4e-66 259.2 1262 30.0
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.4e-64 252.7 436 43.1
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.9e-60 237.3 325 47.4
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 8.5e-59 233.4 156 78.2
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 8.5e-59 233.4 983 29.3
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.0e-56 226.5 1227 29.4
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.4e-53 215.3 712 31.9
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.6e-49 202.6 833 29.1
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.4e-48 199.5 1008 29.3
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.3e-48 198.7 140 70.0
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 5.2e-48 197.6 144 73.6
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 1.2e-47 196.4 145 74.5
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-47 196.4 276 45.3
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 6.3e-46 190.7 565 31.7
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 5.9e-44 184.1 129 66.7
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 5.2e-40 171.0 1031 24.2
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 4.4e-39 167.9 590 28.8
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 4.9e-38 164.5 312 40.4
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 1.6e-36 159.5 369 35.2
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 2.7e-36 158.7 362 36.5
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 2.7e-36 158.7 353 38.2
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 9.5e-34 150.2 970 26.9
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 2.1e-33 149.1 357 33.9
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.2e-28 133.3 167 45.5
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 3.9e-27 128.3 332 28.9
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.8e-25 122.1 500 28.8
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 3.6e-25 121.7 105 54.3
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.2e-23 116.7 174 43.1
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 7.5e-23 114.0 217 42.4
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 2.2e-22 112.5 136 47.1
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 4.1e-21 108.2 61 77.0
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 3.9e-19 101.7 56 85.7
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.1e-16 93.6 253 32.4
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 5.8e-15 87.8 126 52.4
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.9e-14 84.7 131 49.6
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 8.3e-14 84.0 52 67.3
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 9.2e-13 80.5 129 51.9
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.9e-10 72.8 62 58.1
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 3.3e-10 72.0 58 65.5
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 3.6e-09 68.6 207 31.9
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 8.1e-09 67.4 166 33.7
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.4e-06 57.8 138 36.2


User provided reference genes

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