Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 0.0e+00 1085.9 545 100.0
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 8.5e-291 1003.0 544 92.5
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.8e-285 985.3 548 90.3
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 3.1e-285 984.6 548 90.5
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 4.1e-285 984.2 548 90.5
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 2.7e-284 981.5 551 89.7
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.0e-283 979.5 548 90.0
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 5.0e-283 977.2 545 89.9
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 4.4e-279 964.1 549 89.1
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.5e-279 963.4 551 87.8
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.6e-271 938.3 545 86.2
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.8e-265 918.3 552 85.9
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 4.1e-261 904.4 511 89.4
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 5.2e-248 860.9 544 79.4
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 2.4e-232 808.9 548 74.6
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.2e-231 806.6 546 73.6
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.7e-228 795.4 545 73.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 3.5e-228 795.0 545 73.8
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 6.7e-227 790.8 557 70.7
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 7.4e-226 787.3 554 72.0
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 9.6e-226 786.9 554 72.2
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.1e-225 785.8 549 72.3
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 2.8e-225 785.4 402 93.8
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.8e-225 785.4 544 73.0
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 3.7e-225 785.0 514 75.5
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.7e-225 785.0 549 72.5
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 3.1e-224 781.9 554 71.7
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 6.9e-224 780.8 558 70.3
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 9.0e-224 780.4 558 70.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.0e-223 779.2 511 75.9
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 4.5e-223 778.1 542 72.5
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 5.8e-223 777.7 511 75.5
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 4.9e-222 774.6 511 75.3
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 4.9e-222 774.6 513 76.6
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 8.4e-222 773.9 545 71.7
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.4e-221 773.1 516 75.0
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.2e-221 771.9 511 75.1
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.3e-221 770.4 511 75.0
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 2.3e-219 765.8 552 70.1
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 3.9e-219 765.0 552 70.1
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.9e-218 762.7 552 69.7
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 4.0e-216 755.0 487 76.4
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 5.3e-216 754.6 559 69.4
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 9.0e-216 753.8 558 69.5
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.2e-215 753.4 558 69.5
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.5e-215 753.1 548 69.7
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 3.4e-215 751.9 539 71.4
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.0e-214 750.4 544 70.8
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.0e-214 750.4 478 76.6
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 6.5e-214 747.7 516 71.7
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 8.4e-214 747.3 487 75.4
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.1e-213 746.9 561 67.4
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.2e-213 745.3 544 70.2
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 2.1e-212 742.7 541 70.1
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 2.1e-212 742.7 556 69.1
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 4.6e-212 741.5 525 69.9
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.3e-211 739.2 552 67.6
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 3.9e-211 738.4 506 72.5
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.5e-210 736.5 517 71.2
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.9e-210 736.1 544 68.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.9e-210 736.1 544 68.9
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 3.3e-210 735.3 516 70.2
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 7.4e-210 734.2 555 68.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.2e-209 732.6 554 67.3
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.8e-209 732.3 544 68.2
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.3e-209 731.1 557 66.8
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.1e-208 730.3 528 69.9
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 1.8e-208 729.6 539 69.4
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.8e-208 729.6 546 68.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 5.3e-208 728.0 546 68.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 6.9e-208 727.6 544 68.0
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 1.2e-207 726.9 535 68.8
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.2e-207 726.9 546 67.8
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.5e-207 726.5 517 70.4
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 2.2e-206 722.6 535 68.0
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 2.9e-206 722.2 561 66.3
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.9e-205 719.5 548 66.1
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 3.2e-205 718.8 550 66.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 5.5e-205 718.0 517 69.4
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 7.2e-205 717.6 524 69.5
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 9.3e-205 717.2 546 66.5
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.6e-204 716.5 509 70.5
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 1.0e-203 713.8 517 69.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.3e-203 713.4 521 69.3
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 2.3e-203 712.6 509 70.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 3.9e-203 711.8 517 68.9
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 8.7e-203 710.7 545 67.0
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.5e-202 709.1 547 66.0
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 7.4e-202 707.6 553 66.2
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 5.3e-200 701.4 545 65.5
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.3e-200 701.4 470 71.7
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.2e-199 700.3 515 69.9
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 4.5e-199 698.4 559 63.7
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 2.2e-198 696.0 544 66.7
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 5.0e-198 694.9 557 63.7
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.4e-197 693.3 569 63.3
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.3e-195 686.0 560 63.9
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 8.8e-195 684.1 538 64.9
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.5e-194 683.3 523 65.6
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-194 683.3 546 64.7
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-194 683.3 546 64.7
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 5.7e-194 681.4 560 63.8
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 5.7e-194 681.4 532 66.2
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.4e-194 681.0 634 58.2
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.7e-193 679.9 404 79.0
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.2e-193 679.5 532 65.0
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.7e-193 678.7 557 63.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.8e-193 678.3 560 64.3
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 8.2e-193 677.6 519 66.1
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.1e-192 675.6 563 62.2
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.5e-191 671.8 518 67.4
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.9e-190 669.1 563 61.5
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 3.8e-190 668.7 505 68.5
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 4.2e-189 665.2 557 61.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 5.5e-189 664.8 487 68.8
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 9.4e-189 664.1 535 63.9
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.7e-188 662.5 462 70.8
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.0e-182 644.0 543 62.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 2.2e-182 642.9 520 62.9
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.1e-176 624.0 558 59.7
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 1.2e-170 604.0 559 56.5
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.7e-167 592.8 569 56.1
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 3.4e-162 575.9 496 59.3
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 3.5e-159 565.8 510 57.1
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 9.5e-157 557.8 556 56.5
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 4.4e-154 548.9 550 55.3
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 3.9e-150 535.8 495 58.8
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.2e-148 530.8 540 53.3
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.8e-147 526.9 545 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.2e-137 493.4 559 50.1
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 5.1e-134 482.3 431 61.0
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 2.5e-133 479.9 428 61.2
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 8.9e-131 471.5 352 68.8
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 9.9e-130 468.0 544 47.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.7e-129 467.2 370 65.4
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.7e-127 459.9 554 48.4
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 5.1e-126 455.7 375 64.3
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.8e-124 449.9 491 51.9
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.0e-107 392.9 389 56.3
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.6e-100 370.9 306 57.8
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 9.3e-96 355.1 505 43.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 2.7e-95 353.6 537 40.8
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 9.4e-72 275.4 319 51.4
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.6e-63 248.1 305 48.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 2.9e-57 227.3 463 32.6
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 2.5e-56 224.2 163 72.4
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.4e-51 207.6 225 52.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 4.2e-48 196.8 420 32.4
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.2e-47 195.3 465 32.0
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 8.0e-47 192.6 385 36.9
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.0e-45 188.0 91 94.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.4e-43 181.8 118 77.1
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.0e-41 175.6 98 80.6
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.0e-38 165.6 109 77.1
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 8.9e-38 162.5 407 30.0
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 9.2e-35 152.5 169 49.7
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 8.6e-33 146.0 157 49.0
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 4.4e-29 133.7 144 56.9
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 4.1e-27 127.1 158 54.4
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 2.9e-20 104.4 79 60.8
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.3e-17 95.5 160 38.1
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 8.9e-14 82.8 98 50.0
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.2e-13 82.4 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.1e-11 75.9 48 68.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-11 75.1 40 80.0
BcaB04g21125 Brassica carinata HOM05D058416 ORTHO05D095930 2.3e-09 68.2 57 70.2
BcaB02g10557 Brassica carinata HOM05D058416 ORTHO05D005017 3.0e-09 67.8 70 62.9
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 5.6e-08 63.5 33 75.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 7.3e-08 63.2 32 81.2
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 2.8e-07 61.2 233 25.3
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 1.4e-06 58.9 246 26.0
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 1.4e-06 58.9 246 26.0
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 4.0e-06 57.4 246 24.0
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 4.0e-06 57.4 246 24.8
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 4.0e-06 57.4 246 24.0


User provided reference genes

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