Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.4e-151 539.7 283 100.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 6.1e-115 417.9 290 77.2
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 3.9e-114 415.2 280 78.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.1e-111 405.2 310 74.2
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.0e-106 388.7 283 74.6
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 8.8e-106 387.5 283 73.9
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.0e-97 359.8 281 72.6
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.0e-97 359.8 281 72.6
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.9e-93 345.9 281 70.1
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-92 343.6 301 66.8
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 6.1e-91 338.2 281 70.1
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.0e-90 335.5 283 64.7
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.5e-89 333.6 304 65.1
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.2e-82 308.5 282 62.8
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.5e-81 307.0 299 59.5
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 4.7e-67 258.8 299 51.2
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.6e-65 253.1 296 50.7
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 2.6e-65 253.1 312 50.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.8e-65 251.9 313 49.8
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 7.5e-65 251.5 313 49.8
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-63 247.3 313 49.2
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 7.8e-62 241.5 305 48.2
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 7.8e-62 241.5 327 46.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 6.6e-61 238.4 287 52.6
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 6.6e-61 238.4 308 48.7
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 3.3e-60 236.1 313 47.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 3.3e-60 236.1 308 48.7
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.3e-60 235.7 329 47.7
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 5.6e-60 235.3 309 46.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.6e-59 232.6 308 47.7
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 3.6e-59 232.6 308 47.7
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 4.7e-59 232.3 312 46.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 6.2e-59 231.9 304 47.7
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 6.2e-59 231.9 312 49.0
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 4.0e-58 229.2 306 45.4
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 6.8e-58 228.4 292 47.9
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.5e-57 227.3 267 50.6
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 4.4e-57 225.7 230 60.0
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 3.8e-56 222.6 290 47.9
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 4.9e-56 222.2 296 43.6
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 5.4e-55 218.8 315 43.8
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 5.4e-55 218.8 296 46.3
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 2.1e-54 216.9 296 45.6
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 3.5e-54 216.1 298 45.6
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.0e-53 214.5 308 44.2
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 6.6e-53 211.8 312 42.9
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-52 211.1 290 45.9
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.5e-52 210.7 308 44.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.9e-52 210.3 313 45.7
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.9e-52 210.3 313 42.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 4.3e-52 209.1 310 45.2
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.2e-51 207.6 291 45.4
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 6.2e-51 205.3 305 45.6
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 8.1e-51 204.9 297 44.1
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-50 204.1 311 46.0
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.4e-50 204.1 337 43.0
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.4e-50 204.1 295 42.7
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.1e-50 203.0 299 44.1
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 9.0e-50 201.4 299 44.1
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.2e-49 201.1 312 43.3
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 2.0e-49 200.3 312 42.9
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.0e-49 200.3 312 42.9
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 7.6e-49 198.4 304 43.1
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 9.9e-49 198.0 299 43.1
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.2e-48 196.8 163 68.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.2e-48 196.8 309 43.0
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.9e-48 196.4 304 41.4
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 3.8e-48 196.1 293 43.3
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-47 194.5 213 59.2
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 1.4e-47 194.1 299 43.5
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.4e-47 194.1 300 42.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.4e-47 194.1 300 42.7
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.9e-47 193.7 300 42.3
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 5.4e-47 192.2 349 39.5
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 9.3e-47 191.4 298 41.6
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.2e-46 191.0 332 39.8
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.6e-46 190.7 291 43.0
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.7e-46 189.9 246 51.6
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 4.6e-46 189.1 314 39.5
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 7.8e-46 188.3 285 42.5
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.8e-46 188.3 317 42.0
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 7.8e-46 188.3 292 42.8
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 8.7e-45 184.9 325 39.4
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.1e-44 184.5 312 41.3
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 3.3e-44 183.0 375 36.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 3.3e-44 183.0 289 42.6
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 7.3e-44 181.8 301 40.2
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 7.3e-44 181.8 118 80.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 7.3e-44 181.8 313 40.6
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 9.6e-44 181.4 296 41.2
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 3.6e-43 179.5 297 42.4
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 3.6e-43 179.5 263 43.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 8.1e-43 178.3 295 40.0
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.4e-42 177.6 305 41.3
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.8e-42 177.2 301 39.5
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.8e-42 177.2 293 39.9
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 4.0e-42 176.0 297 40.1
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.0e-41 173.7 291 38.8
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.7e-40 170.6 298 40.6
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.4e-39 167.5 313 39.3
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.4e-39 166.8 281 42.3
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.2e-39 166.4 276 42.0
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 9.3e-39 164.9 287 40.4
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 6.7e-37 158.7 290 39.7
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.3e-36 156.4 308 38.3
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 5.6e-36 155.6 309 38.2
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 9.6e-36 154.8 288 37.8
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 6.2e-35 152.1 302 36.8
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.1e-34 151.4 358 33.8
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.8e-34 150.6 327 35.8
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 8.4e-32 141.7 338 36.4
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 2.4e-31 140.2 284 35.6
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 4.2e-31 139.4 151 59.6
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 4.2e-31 139.4 289 37.7
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 3.0e-29 133.3 246 43.1
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 8.7e-29 131.7 326 33.7
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.5e-28 131.0 402 30.3
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.3e-28 129.8 226 39.4
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.6e-28 129.0 306 35.3
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 7.4e-28 128.6 117 59.8
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-27 127.9 219 40.6
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 4.8e-27 125.9 208 42.8
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-26 124.8 117 59.0
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 5.8e-25 119.0 106 60.4
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.4e-23 114.4 155 43.9
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 7.9e-22 108.6 210 37.1
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 2.3e-21 107.1 223 36.8
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.9e-21 106.3 204 35.8
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.9e-21 106.3 344 28.8
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 5.1e-21 105.9 104 55.8
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-20 104.4 100 57.0
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 1.5e-20 104.4 225 34.7
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 6.3e-19 99.0 59 84.7
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.8e-18 97.4 276 27.5
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 4.1e-18 96.3 256 32.8
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.2e-17 94.7 146 41.1
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 2.9e-16 90.1 72 62.5
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 3.2e-15 86.7 90 51.1
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.1e-14 84.0 246 30.5
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-12 78.2 213 33.3
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-12 77.8 186 33.9
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.3e-12 76.6 345 25.2
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 3.3e-12 76.6 114 39.5
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.3e-12 76.3 56 66.1
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 5.7e-12 75.9 64 71.9
C01p41070 Brassica napus HOM05D015278 ORTHO05D005923 2.8e-11 73.6 64 70.3
C04p53240 Brassica napus HOM05D015278 ORTHO05D005923 3.7e-11 73.2 64 70.3
C04p53330 Brassica napus HOM05D015278 ORTHO05D005923 3.7e-11 73.2 64 70.3
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 6.3e-11 72.4 309 27.5
AL1G58150 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.1e-10 71.6 98 46.9
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 1.4e-10 71.2 65 67.7
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 1.4e-10 71.2 65 67.7
C02p22810 Brassica napus HOM05D015278 ORTHO05D005923 2.4e-10 70.5 64 68.8
C07p45330 Brassica napus HOM05D015278 ORTHO05D005923 1.2e-09 68.2 64 67.2
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 2.6e-09 67.0 101 35.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.5e-07 60.5 284 23.2
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 2.1e-06 57.4 81 39.5
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 2.7e-06 57.0 73 42.5


User provided reference genes

Program Settings