Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 0.0e+00 1088.9 580 100.0
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 1.3e-289 999.2 582 90.0
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.4e-288 995.7 583 90.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 3.2e-288 994.6 583 90.2
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 2.1e-287 991.9 582 90.0
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.1e-287 991.9 584 90.6
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.0e-286 989.6 582 89.9
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.5e-285 985.7 583 90.4
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.8e-284 981.5 580 89.3
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.8e-284 981.5 580 89.8
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 4.8e-284 980.7 581 90.0
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 6.3e-284 980.3 581 89.7
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 8.2e-284 979.9 582 90.5
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.1e-283 979.5 580 89.1
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.1e-283 978.0 584 89.9
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 3.1e-283 978.0 587 89.1
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 7.7e-282 973.4 581 89.2
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 5.2e-270 934.1 588 85.2
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.9e-265 918.3 585 84.1
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.2e-250 869.8 583 79.4
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.6e-250 869.4 586 80.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 2.0e-250 869.0 586 78.8
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.5e-250 868.2 582 78.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.7e-249 865.9 584 78.9
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.5e-248 862.8 581 78.1
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.9e-248 862.4 583 79.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.6e-247 859.4 602 77.6
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.1e-246 856.7 589 77.8
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.3e-246 855.5 583 78.2
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 5.2e-246 854.4 586 78.5
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 5.2e-246 854.4 582 78.0
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 9.8e-245 850.1 544 82.2
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 9.8e-245 850.1 535 83.0
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.3e-244 849.7 588 77.4
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.3e-244 849.7 590 77.1
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.7e-244 849.4 526 84.0
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.9e-244 848.6 544 81.2
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.1e-243 846.7 577 78.2
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.1e-243 846.7 577 78.2
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.4e-243 845.5 588 76.7
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 9.2e-243 843.6 581 77.3
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.6e-242 842.8 550 80.9
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.6e-242 842.8 580 77.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 6.0e-242 840.9 584 76.7
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 7.8e-242 840.5 585 76.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 3.0e-241 838.6 549 80.3
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 8.6e-241 837.0 492 87.0
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.1e-240 836.6 584 77.1
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.1e-240 836.6 524 82.8
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.5e-240 836.3 580 77.2
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.5e-240 835.5 551 80.9
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.3e-240 834.7 580 77.8
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.3e-240 834.7 624 73.1
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 7.3e-240 833.9 584 76.5
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 7.3e-240 833.9 526 82.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 9.5e-240 833.6 582 77.3
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 9.5e-240 833.6 575 77.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 9.5e-240 833.6 581 76.2
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 9.5e-240 833.6 563 79.6
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.1e-239 832.4 526 82.1
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.1e-238 830.1 576 77.8
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 2.3e-238 828.9 589 75.9
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 5.2e-238 827.8 524 82.3
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 5.2e-238 827.8 589 74.2
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 6.8e-238 827.4 563 78.9
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.2e-237 826.6 571 78.3
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.5e-237 826.2 595 75.3
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 7.5e-237 823.9 498 85.1
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 2.2e-236 822.4 533 80.1
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 3.7e-236 821.6 555 78.0
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 8.3e-236 820.5 542 81.0
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.4e-235 819.7 572 76.7
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.4e-235 819.7 568 75.9
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.9e-235 819.3 605 72.9
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.4e-235 818.9 562 78.3
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 5.4e-235 817.8 528 80.7
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 7.1e-235 817.4 562 77.2
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 9.2e-235 817.0 590 74.4
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.2e-235 817.0 527 80.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.6e-234 816.2 582 75.8
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 1.0e-233 813.5 534 79.2
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.0e-233 813.5 533 78.6
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.0e-233 813.5 577 74.0
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.3e-233 813.1 527 79.9
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 6.6e-233 810.8 546 77.7
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.1e-232 810.1 590 73.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.9e-232 809.3 619 72.7
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 4.3e-232 808.1 534 79.4
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.6e-231 805.1 589 74.0
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 4.7e-231 804.7 581 74.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.8e-230 800.8 591 73.3
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.2e-229 800.0 517 80.7
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 2.0e-229 799.3 583 75.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.9e-228 794.7 532 78.9
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.0e-226 787.7 532 80.1
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.5e-224 783.1 493 82.8
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 2.8e-223 778.9 494 81.2
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 2.4e-219 765.8 463 84.4
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 9.3e-219 763.8 587 70.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.3e-215 753.4 486 81.5
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.6e-213 745.7 435 88.0
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 5.8e-213 744.6 466 80.5
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.3e-209 732.6 434 86.4
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-208 730.3 497 74.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 6.2e-207 724.5 473 79.9
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 5.3e-206 721.5 583 70.3
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 5.3e-206 721.5 434 84.8
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 6.9e-206 721.1 736 58.2
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 9.9e-205 717.2 583 69.0
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.8e-204 715.3 435 85.3
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.9e-204 714.9 578 69.4
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 4.6e-202 708.4 514 71.2
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.5e-200 703.4 510 70.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.0e-194 681.4 509 69.4
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-192 677.2 392 89.3
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 9.7e-192 674.1 553 65.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 5.0e-188 661.8 439 78.1
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 2.5e-184 649.4 405 82.5
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.8e-182 643.3 422 78.4
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.1e-182 642.5 427 79.4
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 5.3e-182 641.7 389 85.3
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.3e-180 637.1 421 78.9
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 6.5e-180 634.8 435 74.0
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 9.4e-179 630.9 424 76.7
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 3.6e-178 629.0 425 76.7
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 9.4e-171 604.4 443 75.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 8.5e-164 581.3 461 70.3
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-159 567.0 316 92.7
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.3e-148 530.0 443 67.9
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.8e-145 520.4 586 54.9
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.1e-142 511.1 388 72.2
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 8.9e-137 491.5 451 63.6
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.9e-134 483.8 354 70.6
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.6e-133 480.7 299 82.3
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.1e-126 458.0 269 87.0
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.7e-124 450.7 257 88.7
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 4.0e-121 439.5 282 79.8
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.2e-120 438.0 322 76.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.1e-118 431.4 554 45.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.1e-83 315.1 474 45.6
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.0e-79 299.7 213 70.0
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 2.7e-77 293.9 576 38.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 3.0e-76 290.4 185 80.0
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.9e-68 263.5 335 49.3
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 1.0e-63 248.8 196 67.9
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 7.0e-57 226.1 142 80.3
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 8.0e-53 212.6 193 57.0
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.0e-51 208.0 166 62.7
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 9.1e-49 199.1 118 85.6
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 5.9e-48 196.4 126 81.0
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 3.5e-32 144.1 76 97.4
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.7e-31 141.7 109 72.5
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.3e-31 141.4 118 62.7
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.9e-31 141.0 94 72.3
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.3e-30 137.5 140 55.0
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 8.3e-26 122.9 78 79.5
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 8.3e-26 122.9 69 89.9
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 6.6e-23 113.2 91 60.4
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 2.1e-21 108.2 79 69.6
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.8e-21 107.8 104 55.8
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.5e-19 102.1 70 78.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 1.7e-18 98.6 61 78.7
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 3.9e-15 87.4 53 84.9
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.1e-12 79.3 149 36.2
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.1e-12 79.3 58 72.4
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 5.4e-09 67.0 93 49.5
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 3.9e-07 60.8 39 76.9
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 8.6e-07 59.7 45 57.8


User provided reference genes

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