Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g17270 Schrenkiella parvula HOM05D002458 ORTHO05D002603 2.2e-79 298.9 154 100.0
Thhalv10022052m.g Eutrema salsugineum HOM05D002458 ORTHO05D002603 1.7e-63 246.1 155 86.5
BcaB06g25976 Brassica carinata HOM05D002458 ORTHO05D002603 1.4e-60 236.5 155 85.2
A05p30440 Brassica napus HOM05D002458 ORTHO05D002603 1.3e-58 229.9 155 82.6
BraA05t21883Z Brassica rapa HOM05D002458 ORTHO05D002603 3.7e-58 228.4 155 81.9
CARHR094610 Cardamine hirsuta HOM05D002458 ORTHO05D002603 1.8e-57 226.1 154 77.9
BolC5t33331H Brassica oleracea HOM05D002458 ORTHO05D002603 2.4e-57 225.7 155 80.6
C05p46040 Brassica napus HOM05D002458 ORTHO05D002603 7.0e-57 224.2 155 80.6
AT3G19200 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 2.5e-54 215.7 156 79.5
AL3G32580 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 3.4e-51 205.3 156 76.9
Carub.0003s1903 Capsella rubella HOM05D002458 ORTHO05D002603 5.8e-51 204.5 160 75.6
BolC1t00421H Brassica oleracea HOM05D001453 ORTHO05D002020 3.3e-14 82.4 132 43.2
A01p04010 Brassica napus HOM05D001453 ORTHO05D002020 4.3e-14 82.0 132 42.4
BraA01t00390Z Brassica rapa HOM05D001453 ORTHO05D001444 4.3e-14 82.0 132 42.4
THA.LOC104819584 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 4.3e-14 82.0 130 44.6
Thecc.02G099600 Theobroma cacao HOM05D002458 ORTHO05D002603 5.6e-14 81.6 139 44.6
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 7.3e-14 81.3 131 48.9
C01p04330 Brassica napus HOM05D001453 ORTHO05D002020 1.3e-13 80.5 132 42.4
MSTRG.20151 Avicennia marina HOM05D002458 ORTHO05D002603 1.6e-13 80.1 129 41.1
Haze_01829 Corylus avellana HOM05D002458 ORTHO05D002603 1.6e-13 80.1 137 43.8
Duzib248G1687 Durio zibethinus HOM05D002458 ORTHO05D002603 2.1e-13 79.7 135 43.0
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 2.1e-13 79.7 128 44.5
AL7G16820 Arabidopsis lyrata HOM05D002458 ORTHO05D002603 2.8e-13 79.3 128 42.2
Migut.B00340 Erythranthe guttata HOM05D002458 ORTHO05D002603 2.8e-13 79.3 137 41.6
Sp7g32210 Schrenkiella parvula HOM05D002458 ORTHO05D002603 2.8e-13 79.3 136 40.4
TWI79G1260 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 2.8e-13 79.3 116 45.7
CARHR242340 Cardamine hirsuta HOM05D002458 ORTHO05D002603 3.6e-13 79.0 126 42.9
Potri.004G141600 Populus trichocarpa HOM05D002458 ORTHO05D002603 3.6e-13 79.0 115 42.6
Carub.0007s0589 Capsella rubella HOM05D002458 ORTHO05D002603 4.8e-13 78.6 129 42.6
Cfa005475 Carpinus fangiana HOM05D002458 ORTHO05D002603 4.8e-13 78.6 137 43.1
Atru.chr5.2728 Acer truncatum HOM05D002458 ORTHO05D002603 6.2e-13 78.2 124 46.0
AT4G34419 Arabidopsis thaliana HOM05D002458 ORTHO05D002603 6.2e-13 78.2 136 39.7
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 8.1e-13 77.8 133 45.1
CiPaw.05G051800 Carya illinoinensis HOM05D002458 ORTHO05D002603 8.1e-13 77.8 158 38.0
SalBow3G3738 Salvia bowleyana HOM05D002458 ORTHO05D002603 1.4e-12 77.0 121 41.3
CiPaw.06G143400 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.8e-12 76.6 129 41.9
Solyc01g108170.3 Solanum lycopersicum HOM05D002458 ORTHO05D002603 2.4e-12 76.3 103 48.5
Thhalv10027139m.g Eutrema salsugineum HOM05D002458 ORTHO05D002603 3.1e-12 75.9 131 41.2
Peaxi162Scf00003g02325 Petunia axillaris HOM05D002458 ORTHO05D002603 3.1e-12 75.9 124 41.9
QL11p036042 Quercus lobata HOM05D002458 ORTHO05D002603 3.1e-12 75.9 162 38.3
PGSC0003DMG400025891 Solanum tuberosum HOM05D002458 ORTHO05D002603 3.1e-12 75.9 103 48.5
FvH4_2g06210 Fragaria vesca HOM05D002458 ORTHO05D002603 4.0e-12 75.5 124 42.7
FAN24G3116 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.0e-12 75.5 124 42.7
Nitab4.5_0003503g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.0e-12 75.5 103 49.5
Ciclev10029915m.g Citrus clementina HOM05D002458 ORTHO05D002603 5.3e-12 75.1 117 42.7
MD10G1093900 Malus domestica HOM05D002458 ORTHO05D002603 5.3e-12 75.1 129 40.3
Potri.009G102800 Populus trichocarpa HOM05D002458 ORTHO05D002603 5.3e-12 75.1 121 42.1
Sabra04G0093500 Salix brachista HOM05D002458 ORTHO05D002603 5.3e-12 75.1 136 39.7
HanXRQChr16g0515091 Helianthus annuus HOM05D002458 ORTHO05D002603 6.9e-12 74.7 119 44.5
Phvul.003G244300 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 6.9e-12 74.7 133 42.9
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 6.9e-12 74.7 127 44.9
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 6.9e-12 74.7 132 42.4
FAN15G1604 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.0e-12 74.3 124 42.7
Nitab4.5_0007480g0020 Nicotiana tabacum HOM05D002458 ORTHO05D002603 9.0e-12 74.3 123 43.1
Nitab4.5_0023509g0010 Nicotiana tabacum HOM05D002458 ORTHO05D002603 9.0e-12 74.3 104 47.1
Sopen01g050400 Solanum pennellii HOM05D002458 ORTHO05D002603 9.0e-12 74.3 103 47.6
FAN20G0269 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.2e-11 73.9 124 43.5
Lalb_Chr16g0384661 Lupinus albus HOM05D002458 ORTHO05D002603 1.2e-11 73.9 122 41.8
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.2e-11 73.9 135 43.7
COL.COLO4_32666 Corchorus olitorius HOM05D002458 ORTHO05D002603 1.5e-11 73.6 119 46.2
Psat7g124200 Pisum sativum HOM05D002458 ORTHO05D002603 1.5e-11 73.6 119 42.0
Sed0018653 Sechium edule HOM05D002458 ORTHO05D002603 1.5e-11 73.6 116 44.0
FAN27G1641 Fragaria x ananassa HOM05D002458 ORTHO05D002603 2.0e-11 73.2 124 42.7
unitig_61.g26001 Utricularia gibba HOM05D002458 ORTHO05D002603 2.0e-11 73.2 128 38.3
BolC3t20870H Brassica oleracea HOM05D002458 ORTHO05D002603 2.6e-11 72.8 136 39.7
RcHm_v2.0_Chr6g0256981 Rosa chinensis HOM05D002458 ORTHO05D002603 2.6e-11 72.8 125 41.6
A08p16860 Brassica napus HOM05D002458 ORTHO05D002603 3.4e-11 72.4 123 42.3
BraA08t33650Z Brassica rapa HOM05D002458 ORTHO05D002603 3.4e-11 72.4 136 39.0
Cc07_g05940 Coffea canephora HOM05D002458 ORTHO05D002603 3.4e-11 72.4 124 41.9
Peaxi162Scf00016g01824 Petunia axillaris HOM05D002458 ORTHO05D002603 3.4e-11 72.4 84 51.2
TWI09G0929 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 3.4e-11 72.4 111 43.2
Dinv42151 Davidia involucrata HOM05D002458 ORTHO05D002603 4.5e-11 72.0 109 43.1
Lsat_1_v5_gn_7_87020 Lactuca sativa HOM05D002458 ORTHO05D002603 4.5e-11 72.0 117 41.9
Nitab4.5_0002543g0060 Nicotiana tabacum HOM05D002458 ORTHO05D002603 4.5e-11 72.0 123 42.3
CSS0027699 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 5.8e-11 71.6 115 46.1
Ca_18677_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 5.8e-11 71.6 120 41.7
MD05G1079600 Malus domestica HOM05D002458 ORTHO05D002603 5.8e-11 71.6 119 42.0
Medtr4g086340 Medicago truncatula HOM05D002458 ORTHO05D002603 5.8e-11 71.6 107 43.9
BcaC01g00905 Brassica carinata HOM05D002458 ORTHO05D002603 7.6e-11 71.2 136 39.0
C03p85790 Brassica napus HOM05D002458 ORTHO05D002603 7.6e-11 71.2 136 39.0
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 7.6e-11 71.2 124 41.9
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 1.3e-10 70.5 119 45.4
Oeu013702.1 Olea europaea HOM05D002458 ORTHO05D002603 1.3e-10 70.5 134 40.3
Prupe.8G123500 Prunus persica HOM05D002458 ORTHO05D002603 1.3e-10 70.5 126 40.5
TPR.G30834 Trifolium pratense HOM05D002458 ORTHO05D002603 1.3e-10 70.5 119 42.0
Duzib052G0113 Durio zibethinus HOM05D002458 ORTHO05D002603 1.7e-10 70.1 162 37.7
Sopen02g035350 Solanum pennellii HOM05D002458 ORTHO05D002603 2.9e-10 69.3 115 43.5
Oeu004830.1 Olea europaea HOM05D002458 ORTHO05D002603 3.8e-10 68.9 119 42.0
TWI75G1467 Tripterygium wilfordii HOM05D002458 ORTHO05D002603 3.8e-10 68.9 82 45.1
Dinv23616 Davidia involucrata HOM05D002458 ORTHO05D002603 4.9e-10 68.6 148 33.8
CAN.G836.76 Capsicum annuum HOM05D002458 ORTHO05D002603 6.4e-10 68.2 137 40.9
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 6.4e-10 68.2 126 43.7
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 6.4e-10 68.2 133 39.8
HanXRQChr07g0191581 Helianthus annuus HOM05D002458 ORTHO05D002603 1.1e-09 67.4 132 38.6
Actinidia00445 Actinidia chinensis HOM05D002458 ORTHO05D002603 1.4e-09 67.0 119 40.3
VMungo0251G2437 Vigna mungo HOM05D002458 ORTHO05D002603 1.4e-09 67.0 134 40.3
Ciclev10026611m.g Citrus clementina HOM05D002458 ORTHO05D002603 2.4e-09 66.2 122 41.8
CsaV3_3G018550 Cucumis sativus L. HOM05D002458 ORTHO05D002603 2.4e-09 66.2 118 43.2
Hma1.2p1_0370F.1_g137860 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 2.4e-09 66.2 118 39.8
Phvul.003G293000 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 2.4e-09 66.2 121 40.5
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 3.2e-09 65.9 140 37.1
Cc02_g18710 Coffea canephora HOM05D002458 ORTHO05D002603 3.2e-09 65.9 120 40.0
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 3.2e-09 65.9 122 37.7
Glyma.07G211700 Glycine max HOM05D002458 ORTHO05D002603 4.2e-09 65.5 137 38.7
Gorai.008G074900 Gossypium raimondii HOM05D002458 ORTHO05D002603 4.2e-09 65.5 136 36.0
Manes.10G065400 Manihot esculenta HOM05D002458 ORTHO05D002603 4.2e-09 65.5 130 38.5
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 4.2e-09 65.5 137 41.6
FAN26G2469 Fragaria x ananassa HOM05D002458 ORTHO05D002603 5.5e-09 65.1 117 40.2
Sabra09G0078700 Salix brachista HOM05D002458 ORTHO05D002603 5.5e-09 65.1 144 35.4
HanXRQChr10g0288991 Helianthus annuus HOM05D002458 ORTHO05D002603 7.1e-09 64.7 120 40.0
CANSAT01G1685 Cannabis sativa HOM05D002458 ORTHO05D002603 9.3e-09 64.3 155 38.7
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 9.3e-09 64.3 118 37.3
FAN19G0517 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.3e-09 64.3 117 40.2
FAN23G1767 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.3e-09 64.3 117 40.2
FAN28G2673 Fragaria x ananassa HOM05D002458 ORTHO05D002603 9.3e-09 64.3 117 40.2
MD02G1170900 Malus domestica HOM05D002458 ORTHO05D002603 9.3e-09 64.3 118 42.4
RcHm_v2.0_Chr2g0105301 Rosa chinensis HOM05D002458 ORTHO05D002603 9.3e-09 64.3 117 40.2
FAN11G1855 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.2e-08 63.9 117 39.3
FAN16G2042 Fragaria x ananassa HOM05D002458 ORTHO05D002603 1.2e-08 63.9 117 39.3
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 1.2e-08 63.9 127 42.5
Glyma.02G133300 Glycine max HOM05D002458 ORTHO05D002603 1.6e-08 63.5 123 41.5
MD15G1282400 Malus domestica HOM05D002458 ORTHO05D002603 1.6e-08 63.5 119 41.2
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 1.6e-08 63.5 118 38.1
Gohir.D12G068500 Gossypium hirsutum HOM05D002458 ORTHO05D002603 2.1e-08 63.2 121 38.8
FvH4_1g15910 Fragaria vesca HOM05D002458 ORTHO05D002603 2.7e-08 62.8 117 39.3
Lj4g0009220 Lotus japonicus HOM05D002458 ORTHO05D002603 2.7e-08 62.8 106 41.5
MELO3C019512.2 Cucumis melo HOM05D002458 ORTHO05D002603 3.5e-08 62.4 117 41.9
FAN04G0719 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.6e-08 62.0 143 34.3
FAN12G1655 Fragaria x ananassa HOM05D002458 ORTHO05D002603 4.6e-08 62.0 143 34.3
Gorai.007G212200 Gossypium raimondii HOM05D002458 ORTHO05D002603 4.6e-08 62.0 102 42.2
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 4.6e-08 62.0 120 39.2
Sed0017415 Sechium edule HOM05D002458 ORTHO05D002603 6.0e-08 61.6 111 44.1
EL10Ac6g15758 Beta vulgaris HOM05D002458 ORTHO05D002603 7.9e-08 61.2 115 43.5
COL.COLO4_11399 Corchorus olitorius HOM05D002458 ORTHO05D002603 7.9e-08 61.2 111 42.3
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 7.9e-08 61.2 141 36.9
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 7.9e-08 61.2 111 40.5
SalBow1G7029 Salvia bowleyana HOM05D002458 ORTHO05D002603 7.9e-08 61.2 132 38.6
CSS0005083 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 1.0e-07 60.8 129 36.4
CSS0050202 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 1.0e-07 60.8 147 36.1
Gohir.A03G189800 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.0e-07 60.8 131 44.3
HanXRQChr04g0128221 Helianthus annuus HOM05D002458 ORTHO05D002603 1.0e-07 60.8 116 37.9
Nitab4.5_0000310g0020 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.0e-07 60.8 82 41.5
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 1.3e-07 60.5 115 41.7
Gohir.A11G191400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.3e-07 60.5 102 41.2
Gohir.A12G070600 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.3e-07 60.5 136 33.8
Gohir.D02G210400 Gossypium hirsutum HOM05D002458 ORTHO05D002603 1.8e-07 60.1 130 40.8
Gorai.005G238400 Gossypium raimondii HOM05D002458 ORTHO05D002603 1.8e-07 60.1 130 40.8
arahy.Tifrunner.gnm1.ann1.Z85DSV Arachis hypogaea HOM05D002458 ORTHO05D002603 2.3e-07 59.7 143 38.5
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 3.0e-07 59.3 125 43.2
CANSAT25G1360 Cannabis sativa HOM05D002458 ORTHO05D002603 3.9e-07 58.9 70 48.6
Duzib264G0584 Durio zibethinus HOM05D002458 ORTHO05D002603 3.9e-07 58.9 96 39.6
PGR042G0791 Punica granatum HOM05D002458 ORTHO05D002603 3.9e-07 58.9 121 38.0
CsaV3_2G016870 Cucumis sativus L. HOM05D002458 ORTHO05D002603 5.1e-07 58.5 119 38.7
Lalb_Chr09g0323131 Lupinus albus HOM05D002458 ORTHO05D002603 5.1e-07 58.5 129 41.1
Rhsim05G0083500 Rhododendron simsii HOM05D002458 ORTHO05D002603 5.1e-07 58.5 123 36.6
SalBow6G2746 Salvia bowleyana HOM05D002458 ORTHO05D002603 5.1e-07 58.5 105 41.9
ECA234G2959 Erigeron canadensis HOM05D002458 ORTHO05D002603 6.7e-07 58.2 128 35.2
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 6.7e-07 58.2 123 41.5
Ah.02g124270 Amaranthus hybridus HOM05D002458 ORTHO05D002603 8.7e-07 57.8 127 38.6
Ca_19502_v3 Cicer arietinum L. HOM05D002458 ORTHO05D002603 8.7e-07 57.8 74 47.3
HanXRQChr16g0497601 Helianthus annuus HOM05D002458 ORTHO05D002603 1.5e-06 57.0 115 39.1
MELO3C020898.2 Cucumis melo HOM05D002458 ORTHO05D002603 1.9e-06 56.6 124 38.7
Hma1.2p1_0200F.1_g085920 Hydrangea macrophylla HOM05D002458 ORTHO05D002603 1.9e-06 56.6 122 39.3
CDE03G0428 Ceratophyllum demersum HOM05D002458 ORTHO05D002603 2.5e-06 56.2 120 38.3
Lsat_1_v5_gn_5_112820 Lactuca sativa HOM05D002458 ORTHO05D002603 2.5e-06 56.2 115 38.3
Nitab4.5_0001034g0120 Nicotiana tabacum HOM05D002458 ORTHO05D002603 2.5e-06 56.2 71 42.3
PGR142G0732 Punica granatum HOM05D002458 ORTHO05D002603 2.5e-06 56.2 106 38.7
TAR381G1245 Trochodendron aralioides HOM05D002458 ORTHO05D002603 2.5e-06 56.2 111 34.2
ClCG05G010020 Citrullus lanatus HOM05D002458 ORTHO05D002603 3.3e-06 55.8 73 47.9
Migut.K00764 Erythranthe guttata HOM05D002458 ORTHO05D002603 3.3e-06 55.8 127 37.0
Sc18g0004030 Simmondsia chinensis HOM05D002458 ORTHO05D002603 3.3e-06 55.8 74 45.9
Cpa.g.sc55.162 Carica papaya HOM05D002458 ORTHO05D002603 4.3e-06 55.5 98 40.8
Migut.N01190 Erythranthe guttata HOM05D002458 ORTHO05D002603 5.6e-06 55.1 135 39.3
Gohir.D11G198200 Gossypium hirsutum HOM05D002458 ORTHO05D002603 7.4e-06 54.7 78 43.6
Lsat_1_v5_gn_4_166120 Lactuca sativa HOM05D002458 ORTHO05D002603 7.4e-06 54.7 142 38.0
Migut.H00441 Erythranthe guttata HOM05D002458 ORTHO05D002603 9.6e-06 54.3 84 40.5


User provided reference genes

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