Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 5.2e-59 230.7 107 100.0
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.1e-56 223.0 107 95.3
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 4.1e-56 221.1 107 94.4
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 4.1e-56 221.1 107 94.4
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 9.2e-56 219.9 107 94.4
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 9.2e-56 219.9 107 94.4
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 9.2e-56 219.9 107 94.4
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 9.2e-56 219.9 107 94.4
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.6e-55 219.2 107 93.5
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.6e-55 219.2 107 93.5
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 2.0e-55 218.8 107 93.5
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.7e-55 218.4 107 93.5
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.5e-55 218.0 107 93.5
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 3.5e-55 218.0 107 92.5
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 4.6e-55 217.6 107 92.5
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 4.6e-55 217.6 107 92.5
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 4.6e-55 217.6 106 93.4
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 6.0e-55 217.2 107 92.5
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 7.8e-55 216.9 107 94.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 7.8e-55 216.9 107 94.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 7.8e-55 216.9 107 94.4
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 7.8e-55 216.9 107 92.5
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.0e-54 216.5 107 92.5
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 2.3e-54 215.3 107 93.5
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.3e-54 215.3 107 93.5
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.3e-54 215.3 107 93.5
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 5.0e-54 214.2 107 90.7
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.1e-53 213.0 107 89.7
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 3.3e-53 211.5 109 90.8
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.6e-52 208.0 104 90.4
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 3.6e-52 208.0 104 90.4
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.8e-51 205.7 104 89.4
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 4.0e-51 204.5 97 94.8
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 5.2e-51 204.1 97 94.8
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 86.0
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 80.4
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 80.4
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 78.5
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 78.5
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 80.4
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 80.4
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 79.4
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 79.4
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 77.6
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 81.3
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.3e-46 189.5 102 82.4
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 79.4
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 77.6
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 78.5
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 78.5
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 3.9e-46 188.0 107 76.6
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 5.1e-46 187.6 106 79.2
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 78.5
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 78.5
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 77.6
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 8.6e-46 186.8 107 82.2
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 78.5
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.9e-45 185.7 107 77.6
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.9e-45 185.7 101 83.2
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.5e-45 185.3 107 79.4
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 2.5e-45 185.3 107 78.5
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 5.6e-45 184.1 102 81.4
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 9.5e-45 183.3 102 77.5
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 76.6
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 76.9
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 76.9
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 76.9
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 76.9
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 76.9
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 2.1e-44 182.2 105 75.2
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.8e-44 181.8 107 75.7
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 3.6e-44 181.4 106 79.2
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 3.6e-44 181.4 102 79.4
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 3.6e-44 181.4 102 76.5
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 3.6e-44 181.4 107 76.6
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 4.7e-44 181.0 107 75.7
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 4.7e-44 181.0 102 77.5
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 6.2e-44 180.6 102 78.4
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 8.1e-44 180.3 107 77.6
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.1e-43 179.9 107 74.8
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.4e-43 179.5 107 73.8
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.4e-43 179.5 107 73.8
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.4e-43 179.5 98 78.6
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.8e-43 179.1 107 74.8
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 3.1e-43 178.3 108 75.9
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.0e-43 177.9 98 79.6
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 4.0e-43 177.9 97 81.4
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 4.0e-43 177.9 102 80.4
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 4.0e-43 177.9 105 76.2
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 6.8e-43 177.2 106 75.5
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.2e-42 176.4 102 75.5
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.2e-42 176.4 104 76.0
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 1.5e-42 176.0 107 73.8
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 2.0e-42 175.6 107 74.8
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 2.0e-42 175.6 108 75.0
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 2.6e-42 175.3 97 81.4
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.6e-42 175.3 108 75.9
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 3.4e-42 174.9 96 82.3
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 3.4e-42 174.9 107 74.8
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 3.4e-42 174.9 107 74.8
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.4e-42 174.9 108 75.0
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 4.4e-42 174.5 104 76.9
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 4.4e-42 174.5 96 81.2
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 4.4e-42 174.5 107 72.9
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 7.6e-42 173.7 97 80.4
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 7.6e-42 173.7 97 80.4
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 7.6e-42 173.7 97 78.4
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 7.6e-42 173.7 108 74.1
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 9.9e-42 173.3 104 75.0
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 8.4e-41 170.2 102 75.5
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.4e-40 169.5 99 76.8
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 2.4e-40 168.7 106 74.5
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 5.4e-40 167.5 107 71.0
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 7.1e-40 167.2 102 73.5
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.2e-39 166.4 100 76.0
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 1.6e-39 166.0 97 76.3
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.6e-39 166.0 96 78.1
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.1e-39 165.6 97 75.3
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 2.1e-39 165.6 97 77.3
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 3.5e-39 164.9 101 73.3
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 7.8e-39 163.7 94 74.5
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 3.0e-38 161.8 97 74.2
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 3.9e-38 161.4 99 74.7
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 8.6e-38 160.2 99 74.7
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 8.6e-38 160.2 96 75.0
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 1.1e-37 159.8 99 73.7
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.5e-37 159.5 101 71.3
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 2.5e-37 158.7 98 74.5
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 4.3e-37 157.9 104 67.3
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 1.2e-36 156.4 101 71.3
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 2.1e-36 155.6 104 67.3
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 8.1e-36 153.7 93 73.1
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 9.0e-35 150.2 94 71.3
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 2.0e-34 149.1 89 71.9
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 4.6e-31 137.9 78 78.2
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 8.7e-30 133.7 85 72.9
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 3.1e-27 125.2 89 64.0
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 9.0e-27 123.6 92 59.8
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 1.2e-26 123.2 68 75.0
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.5e-26 122.9 92 59.8
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 2.0e-26 122.5 83 67.5
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 5.4e-24 114.4 74 71.6
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 1.6e-23 112.8 74 64.9
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 1.1e-21 106.7 91 58.2
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 1.1e-21 106.7 72 65.3
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 1.9e-21 105.9 76 68.4
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 4.3e-21 104.8 86 55.8
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 9.6e-21 103.6 103 49.5
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 1.6e-20 102.8 65 70.8
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 6.2e-20 100.9 84 51.2
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 6.9e-19 97.4 59 69.5
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 2.6e-18 95.5 94 50.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 3.0e-14 82.0 54 70.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 7.6e-10 67.4 50 62.0
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 5.5e-08 61.2 37 75.7
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 9.3e-08 60.5 70 42.9
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.6e-07 59.7 61 54.1
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 1.3e-06 56.6 37 70.3


User provided reference genes

Program Settings