Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 6.9e-235 817.0 434 100.0
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 1.9e-208 729.2 434 86.2
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 5.7e-205 717.6 435 85.3
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 5.7e-205 717.6 435 85.3
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 8.2e-204 713.8 436 86.9
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 7.0e-203 710.7 436 86.5
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 8.8e-198 693.7 434 81.6
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 3.3e-197 691.8 427 82.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 3.5e-194 681.8 434 80.9
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 3.7e-188 661.8 434 78.1
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.1e-187 660.2 434 78.8
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 3.0e-182 642.1 435 76.3
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.2e-175 620.2 433 74.1
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.4e-147 526.9 433 63.0
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-146 523.5 430 63.5
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 1.1e-144 517.3 431 61.9
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 3.3e-144 515.8 436 62.2
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-143 513.8 430 62.8
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.6e-143 513.5 436 61.0
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-143 511.5 430 62.3
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.4e-142 509.6 433 61.2
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-142 508.8 430 62.1
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.0e-142 508.8 430 62.1
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 2.0e-141 506.5 431 61.7
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 4.4e-141 505.4 427 63.2
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 5.8e-141 505.0 427 63.0
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 5.8e-141 505.0 428 61.7
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 1.3e-140 503.8 435 60.0
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 2.9e-140 502.7 428 61.9
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 1.9e-139 500.0 422 61.8
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.4e-139 499.6 440 59.3
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 9.3e-139 497.7 430 60.7
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 5.1e-137 491.9 437 59.5
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 6.6e-137 491.5 431 58.9
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.9e-136 490.0 463 56.8
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.5e-136 489.6 425 60.2
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 4.3e-136 488.8 426 59.9
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.8e-135 486.1 432 59.7
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 8.1e-135 484.6 444 57.2
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.1e-134 484.2 380 63.7
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.4e-134 483.0 462 56.3
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 9.0e-134 481.1 433 61.4
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 9.0e-134 481.1 344 67.7
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 1.2e-133 480.7 433 57.7
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 2.0e-133 479.9 431 58.2
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.6e-133 479.6 429 58.7
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 3.4e-133 479.2 432 59.3
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 3.4e-133 479.2 430 61.6
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 9.9e-133 477.6 434 58.8
Prupe.5G224900 Prunus persica HOM05D003094 ORTHO05D003482 1.3e-132 477.2 423 60.8
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.7e-132 476.9 431 58.5
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 3.8e-132 475.7 344 67.4
BcaC05g28647 Brassica carinata HOM05D003094 ORTHO05D003482 1.1e-131 474.2 254 92.1
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-131 473.8 434 59.9
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.9e-131 473.4 433 58.0
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 9.3e-131 471.1 437 58.6
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.2e-130 470.7 437 60.9
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.7e-130 469.5 442 56.1
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.5e-130 469.2 410 57.1
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 6.0e-130 468.4 346 66.5
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.0e-129 467.6 435 57.5
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 1.8e-129 466.8 439 56.3
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.8e-129 466.8 445 55.5
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.0e-129 466.1 445 55.3
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.0e-129 466.1 437 56.5
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 3.9e-129 465.7 356 64.6
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 5.1e-129 465.3 421 59.4
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 5.1e-129 465.3 348 66.4
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 2.5e-128 463.0 341 68.0
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 9.6e-128 461.1 351 64.4
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 9.6e-128 461.1 435 57.0
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-127 460.7 430 58.6
Migut.D00778 Erythranthe guttata HOM05D003094 ORTHO05D003482 4.8e-127 458.8 433 56.8
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 8.1e-127 458.0 440 56.1
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 1.1e-126 457.6 344 66.0
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 2.4e-126 456.4 432 54.9
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 4.0e-126 455.7 337 66.2
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 6.9e-126 454.9 439 56.3
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 2.6e-125 453.0 434 53.5
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 3.4e-125 452.6 431 58.0
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 5.5e-123 445.3 434 54.8
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 2.7e-122 443.0 348 63.8
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 1.3e-121 440.7 333 64.9
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 1.8e-121 440.3 435 51.7
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 3.9e-121 439.1 433 55.0
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 3.9e-121 439.1 424 55.7
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 5.1e-121 438.7 431 57.5
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 6.7e-121 438.3 437 54.5
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 4.3e-120 435.6 429 55.7
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.3e-119 434.1 406 56.7
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.6e-119 433.7 345 60.0
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.7e-119 432.6 422 55.9
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 4.8e-119 432.2 526 47.1
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 8.2e-119 431.4 425 56.0
SalBow7G3604 Salvia bowleyana HOM05D003094 ORTHO05D003482 1.8e-118 430.3 443 53.0
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 6.5e-116 421.8 333 63.7
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.7e-114 416.4 358 58.7
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 1.0e-113 414.5 419 52.7
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 8.7e-113 411.4 467 49.3
CDE11G0955 Ceratophyllum demersum HOM05D003094 ORTHO05D003482 5.7e-112 408.7 433 50.6
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 2.3e-105 386.7 423 50.6
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 3.3e-104 382.9 410 51.5
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.7e-100 370.5 464 46.6
SEGI_02552 Sequoiadendron giganteum HOM05D003094 ORTHO05D003482 7.5e-72 275.4 355 45.1
Nitab4.5_0008639g0020 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.3e-65 253.8 218 56.9
Prupe.4G184600 Prunus persica HOM05D003094 ORTHO05D003482 2.1e-58 230.7 157 68.8
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 1.0e-57 228.4 253 51.0
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 2.3e-57 227.3 175 77.1
RcHm_v2.0_Chr2g0128191 Rosa chinensis HOM05D003094 ORTHO05D003482 1.9e-54 217.6 131 80.2
Oeu010083.1 Olea europaea HOM05D003094 ORTHO05D003482 1.7e-44 184.5 272 39.7
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 3.9e-44 183.3 229 46.7
TAR622G0867 Trochodendron aralioides HOM05D003094 ORTHO05D009164 5.2e-41 172.9 235 43.4
Oeu010081.1 Olea europaea HOM05D003094 ORTHO05D003482 8.4e-39 165.6 149 53.7
Pp3c18_10090 Physcomitrium patens HOM05D003094 ORTHO05D003482 7.1e-30 136.0 97 67.0
Mapoly0002s0206 Marchantia polymorpha HOM05D003094 ORTHO05D003482 1.3e-28 131.7 101 62.4
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.3e-27 127.1 230 37.8
Gohir.A06G136104 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.3e-27 125.9 101 63.4
CBR_g23797 Chara braunii HOM05D003094 ORTHO05D003482 4.0e-25 120.2 98 58.2
SMO367G0461 Selaginella moellendorffii HOM05D003094 ORTHO05D003482 2.7e-21 107.5 119 51.3
Gorai.011G161100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.7e-20 104.8 80 60.0
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.9e-19 101.3 125 49.6
Gohir.D10G144200 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.3e-19 100.5 78 59.0
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 5.6e-19 99.8 158 41.1
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.2e-18 96.3 132 48.5
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-17 95.5 126 49.2
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.4e-17 95.1 161 38.5
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 1.2e-16 92.0 160 38.8
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 2.6e-16 90.9 160 38.8
Oeu029034.1 Olea europaea HOM05D003094 ORTHO05D003482 3.4e-16 90.5 97 50.5
BcaC08g46948 Brassica carinata HOM05D003094 ORTHO05D003482 7.6e-16 89.4 71 66.2
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 1.7e-15 88.2 73 64.4
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.9e-15 86.7 73 63.0
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.4e-15 86.3 73 63.0
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.1e-14 85.5 74 60.8
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-13 82.0 74 59.5
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-13 81.3 74 60.8
Nn3g17957 Nelumbo nucifera HOM05D003094 ORTHO05D003482 1.3e-12 78.6 78 53.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 3.7e-10 70.5 176 33.0
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 8.1e-10 69.3 161 32.9
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.4e-09 68.6 92 43.5
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.8e-09 68.2 169 34.3
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 3.1e-09 67.4 158 33.5
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 5.3e-09 66.6 186 32.8
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 6.9e-09 66.2 171 32.7
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 6.9e-09 66.2 175 32.6
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 2.0e-08 64.7 156 32.7
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 2.0e-08 64.7 186 30.1
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 2.6e-08 64.3 164 31.1
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 2.6e-08 64.3 168 30.4
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 4.5e-08 63.5 158 34.2
Nitab4.5_0008639g0040 Nicotiana tabacum HOM05D000806 ORTHO05D002324 5.8e-08 63.2 48 54.2
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 5.8e-08 63.2 159 32.1
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.0e-07 62.4 192 30.7
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.0e-07 62.4 97 37.1
Gohir.A03G176500 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-07 62.0 146 37.0
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.3e-07 62.0 79 44.3
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.3e-07 62.0 79 44.3
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.9e-07 60.8 131 30.5
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 2.9e-07 60.8 170 33.5
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 3.8e-07 60.5 199 30.2
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.8e-07 60.5 79 43.0
MCO03G327 Micromonas commoda HOM05D003094 ORTHO05D003482 3.8e-07 60.5 89 40.4
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 4.9e-07 60.1 158 29.1
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 4.9e-07 60.1 79 40.5
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 4.9e-07 60.1 70 41.4
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 4.9e-07 60.1 96 39.6
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 4.9e-07 60.1 88 38.6
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 6.5e-07 59.7 174 32.2
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 1.4e-06 58.5 65 46.2
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 1.4e-06 58.5 80 38.8
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 1.4e-06 58.5 80 38.8
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 1.4e-06 58.5 80 38.8
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.9e-06 58.2 158 29.7
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.9e-06 58.2 68 42.6
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.9e-06 58.2 156 30.1
Gohir.A13G209900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.2e-06 57.4 146 36.3
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 4.2e-06 57.0 94 40.4
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 4.2e-06 57.0 83 42.2
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 5.5e-06 56.6 171 29.2
AL3G42330 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 7.1e-06 56.2 34 79.4
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 9.3e-06 55.8 89 41.6
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 9.3e-06 55.8 98 36.7
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 9.3e-06 55.8 170 29.4


User provided reference genes

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