Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.4e-199 699.5 366 100.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.7e-173 612.8 369 88.1
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.1e-172 608.2 364 86.8
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.7e-170 602.8 364 87.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.5e-169 599.0 366 85.8
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 3.3e-169 598.6 366 85.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.3e-169 598.2 364 85.4
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-168 596.7 364 84.9
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 4.7e-168 594.7 364 86.3
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-167 593.6 374 85.0
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 3.4e-166 588.6 364 84.1
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.3e-165 583.9 366 84.4
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-163 580.1 368 84.2
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-161 573.2 361 82.8
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.9e-157 558.9 351 82.9
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 7.0e-156 554.3 348 83.0
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.5e-155 552.0 348 82.8
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.3e-149 533.5 367 76.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.7e-149 533.1 368 76.9
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.9e-149 531.6 367 75.5
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.4e-148 529.3 367 74.9
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.2e-148 527.3 367 74.7
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 9.2e-148 527.3 382 74.1
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 8.6e-146 520.8 362 74.3
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.7e-144 515.0 370 74.1
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.0e-143 511.9 366 72.7
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 8.9e-143 510.8 368 73.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.9e-141 505.8 369 72.6
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 7.8e-139 497.7 368 71.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.3e-138 496.9 354 74.0
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.3e-138 496.1 368 71.5
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 3.4e-134 482.3 402 65.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 6.0e-131 471.5 398 65.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.4e-127 459.5 293 82.9
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.7e-115 419.5 366 61.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.9e-114 415.6 366 60.7
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.7e-114 414.5 366 60.7
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 7.4e-113 411.4 365 60.0
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 3.7e-112 409.1 364 60.4
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 6.2e-112 408.3 368 60.3
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 8.1e-112 407.9 365 59.2
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 4.0e-111 405.6 365 59.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 4.0e-111 405.6 365 58.4
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.2e-110 404.1 364 57.7
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.5e-110 402.1 366 58.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 4.5e-110 402.1 366 58.5
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.2e-109 399.8 378 56.6
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-108 397.1 364 57.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.4e-108 397.1 366 55.7
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.6e-107 393.7 366 57.1
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-107 393.3 363 57.3
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 3.5e-107 392.5 371 56.9
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.0e-106 391.0 367 56.7
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 5.1e-106 388.7 363 56.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.7e-106 388.3 371 57.1
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.9e-105 386.7 369 56.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 3.3e-105 386.0 373 56.0
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 7.4e-105 384.8 368 57.3
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.8e-103 380.2 366 55.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 3.1e-103 379.4 367 52.6
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 6.9e-103 378.3 368 53.8
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 9.0e-103 377.9 368 53.5
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 7.6e-102 374.8 365 54.5
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.7e-101 373.6 367 53.7
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.9e-101 372.9 364 55.5
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.9e-101 372.9 364 54.9
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.5e-101 371.7 364 53.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.5e-101 371.3 366 53.8
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.9e-100 370.2 364 54.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.5e-100 369.8 364 52.5
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 9.3e-100 367.9 368 52.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.2e-99 367.5 364 52.2
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.1e-99 366.7 364 52.2
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.7e-99 366.3 367 54.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.7e-99 366.3 367 54.0
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 4.6e-99 365.5 370 52.2
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 6.1e-99 365.2 363 52.9
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 3.9e-98 362.5 364 51.9
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 5.1e-98 362.1 364 52.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.1e-98 362.1 364 51.4
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 6.7e-98 361.7 364 51.1
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 7.4e-97 358.2 368 53.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 7.4e-97 358.2 366 51.9
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.7e-97 357.8 366 52.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.3e-96 357.5 379 50.7
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.3e-96 355.1 366 50.8
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.4e-95 353.2 363 50.7
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.4e-95 353.2 367 51.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.0e-94 350.1 366 51.9
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.0e-94 350.1 371 51.5
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 7.7e-94 348.2 367 51.2
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 7.7e-94 348.2 367 51.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 1.7e-93 347.1 363 50.4
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.5e-92 343.2 368 51.9
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 3.2e-92 342.8 324 57.4
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 3.2e-92 342.8 372 51.6
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 7.2e-92 341.7 365 50.7
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.7e-91 339.7 365 51.2
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.7e-91 339.7 372 50.3
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.7e-91 339.7 372 49.2
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.7e-91 339.7 365 50.1
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 4.6e-91 339.0 308 58.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.1e-91 338.6 386 49.7
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.9e-90 335.9 372 50.5
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.1e-90 335.5 367 48.8
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 8.8e-90 334.7 402 48.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.3e-89 332.8 369 49.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.7e-88 330.5 405 46.2
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 6.3e-88 328.6 366 48.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.1e-87 327.8 332 51.2
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.4e-87 326.6 285 58.2
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 6.9e-87 325.1 487 42.5
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.7e-85 320.5 392 45.2
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.7e-85 320.5 283 57.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.2e-85 320.1 314 54.1
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 3.8e-85 319.3 509 40.7
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.2e-84 315.8 351 49.9
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.2e-83 314.3 333 53.8
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-81 307.8 369 48.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.1e-81 307.8 374 47.9
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 4.8e-80 302.4 365 47.7
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.3e-80 302.0 313 54.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 1.8e-79 300.4 366 44.3
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.3e-79 298.9 370 45.4
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.3e-77 294.3 369 43.4
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.8e-77 292.7 317 51.7
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.8e-71 273.9 561 36.7
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 4.1e-71 272.7 312 49.4
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.2e-70 271.2 307 48.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.2e-68 261.9 207 63.8
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.0e-67 258.5 208 63.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 5.4e-63 245.7 208 58.2
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.0e-61 241.5 227 54.2
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-60 238.0 207 57.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 7.2e-60 235.3 475 33.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.8e-57 224.9 166 69.3
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.7e-56 224.2 166 69.3
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-56 223.4 163 69.3
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 6.3e-56 222.2 314 40.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.8e-55 220.7 166 68.7
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.4e-55 219.2 166 68.1
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.4e-55 219.2 312 43.6
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.7e-53 214.2 162 66.7
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.3e-53 213.8 165 65.5
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.5e-52 211.1 381 35.7
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.8e-50 202.2 166 65.1
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.2e-49 201.4 338 37.3
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.5e-49 201.1 309 39.5
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.8e-46 188.7 207 51.2
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.0e-45 186.8 207 50.7
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.3e-44 183.0 155 58.7
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.2e-43 181.4 379 34.8
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.2e-43 179.1 382 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 8.0e-43 178.7 383 34.2
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 8.0e-43 178.7 200 49.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.6e-41 173.7 290 41.4
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.3e-40 171.4 366 33.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.3e-40 168.7 190 54.7
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.3e-40 168.7 379 31.1
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.3e-36 155.6 127 63.0
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.3e-36 155.6 257 37.7
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.2e-33 148.3 371 29.4
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 1.5e-33 147.9 126 57.9
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 9.8e-33 145.2 201 39.8
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.9e-32 142.9 110 67.3
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.1e-30 137.5 152 52.0
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 8.6e-29 132.1 163 47.2
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 1.8e-26 124.4 130 47.7
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.2e-25 121.7 157 43.9
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.7e-24 117.9 157 42.7
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 2.1e-22 110.9 172 38.4
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.5e-20 104.0 134 44.0
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.8e-18 97.8 233 30.9
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 8.9e-18 95.5 138 42.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 3.4e-17 93.6 137 42.3
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.4e-15 88.2 270 31.5
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 2.2e-08 64.3 387 23.5


User provided reference genes

Program Settings